mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 1,017,068 | 0 | A | T | 26.3% | 32.4 / 10.6 | 19 | L171Q (CTG→CAG) | kdpB | potassium transport system ATPase chain B |
| * | AM260480 | 453,653 | 0 | G | C | 22.7% | 45.1 / 12.1 | 22 | G231A (GGC→GCC) | h16_B0396 | Acyl‑CoA dehydrogenase |
| Marginal new junction evidence (lowest skew 10 of 122 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 257679 = | 29 (1.070) | 5 (0.200) | 5/194 | 1.7 | 15.7% | coding (1312/1419 nt) | ahcY | Adenosylhomocysteinase |
| ? | AM260479 | 257706 = | 27 (1.090) | coding (1339/1419 nt) | ahcY | Adenosylhomocysteinase | |||||
| * | ? | AM260480 | = 1447176 | 24 (0.840) | 5 (0.200) +CGCCATGCCCG |
5/190 | 1.8 | 19.9% | coding (104/726 nt) | h16_B1290 | conserved hypothetical protein |
| ? | AM260480 | 1447229 = | 21 (0.740) | coding (157/726 nt) | h16_B1290 | conserved hypothetical protein | |||||
| * | ? | AM260479 | = 3858689 | 41 (1.510) | 5 (0.200) | 5/196 | 1.8 | 12.8% | coding (159/693 nt) | h16_A3591 | transcriptional regulator, GntR‑family |
| ? | AM260479 | = 3858754 | 30 (1.190) | coding (224/693 nt) | h16_A3591 | transcriptional regulator, GntR‑family | |||||
| * | ? | AM260479 | 2631603 = | 37 (1.360) | 5 (0.200) | 5/196 | 1.8 | 14.7% | coding (371/1545 nt) | h16_A2417 | outer membrane heavy metal efflux protein |
| ? | AM260479 | 2631621 = | 24 (0.960) | coding (353/1545 nt) | h16_A2417 | outer membrane heavy metal efflux protein | |||||
| * | ? | AY305378 | = 347652 | 25 (0.900) | 4 (0.160) | 4/196 | 1.9 | 14.5% | intergenic (‑42/+61) | PHG333/pri | hypothetical protein/putative primase |
| ? | AY305378 | = 347655 | 24 (0.940) | intergenic (‑45/+58) | PHG333/pri | hypothetical protein/putative primase | |||||
| * | ? | AM260480 | 2906078 = | 33 (1.160) | 6 (0.230) | 5/198 | 1.9 | 17.4% | intergenic (‑169/‑193) | h16_B2572/h16_B2573 | Ribonuclease BN/Hypothetical protein |
| ? | AM260480 | 2906094 = | 26 (0.980) | intergenic (‑185/‑177) | h16_B2572/h16_B2573 | Ribonuclease BN/Hypothetical protein | |||||
| * | ? | AM260480 | = 704749 | 22 (0.770) | 5 (0.190) | 5/196 | 1.9 | 19.5% | coding (64/966 nt) | h16_B0631 | conserved hypothetical protein |
| ? | AM260480 | = 704750 | 21 (0.800) | coding (65/966 nt) | h16_B0631 | conserved hypothetical protein | |||||
| * | ? | AM260480 | 94118 = | 26 (0.920) | 5 (0.190) | 5/196 | 1.9 | 18.2% | intergenic (‑273/‑361) | leuA2/h16_B0082 | 2‑Isopropylmalate synthase/conserved hypothetical protein |
| ? | AM260480 | 94138 = | 21 (0.800) | intergenic (‑293/‑341) | leuA2/h16_B0082 | 2‑Isopropylmalate synthase/conserved hypothetical protein | |||||
| * | ? | AM260479 | = 4042611 | 30 (1.100) | 4 (0.170) | 4/184 | 1.9 | 13.1% | coding (455/606 nt) | h16_A3738 | conserved hypothetical protein |
| ? | AM260479 | = 4042597 | 27 (1.140) | coding (469/606 nt) | h16_A3738 | conserved hypothetical protein | |||||
| * | ? | AM260479 | = 4027508 | 42 (1.550) | 4 (0.160) | 4/196 | 2.0 | 8.8% | coding (536/768 nt) | h16_A3728 | transcriptional regulator, TetR/AcrR‑family |
| ? | AM260479 | = 4027549 | 44 (1.750) | coding (495/768 nt) | h16_A3728 | transcriptional regulator, TetR/AcrR‑family | |||||