| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 836152 = | 49 (1.790) | 6 (0.230) | 6/202 | 1.6 | 12.2% | coding (21/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 836171 = | 40 (1.550) | coding (2/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCGGATTGCCCAATGCGAATACGTGCCAGAATATGTCATCAGGCTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/836283‑836152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAC > AM260479/836171‑836260 CGCGGATTGCCCAATGCGAATACGTGCCAGAATATGTCATCAGGCTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGCAT > 1:799063/1‑134 AGGCTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCA < 2:799063/133‑1 CTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGCATCACGGCGCGGAAGACTTCGAT < 1:1056405/111‑1 CTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGCATCACGGCGCGGAAGACTTCGAT > 2:1056405/1‑111 CCGTGATGCTGACCGGCACCGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCA < 1:602145/88‑1 CCGTGATGCTGACCGGCACCGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCA > 2:602145/1‑88 TCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAC < 1:812783/95‑1 TCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAC > 2:812783/1‑95 TCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGG > 1:982504/1‑61 TCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGG < 2:982504/61‑1 CAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGG > 1:76011/1‑60 CAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGG < 2:76011/60‑1 CGCGGATTGCCCAATGCGAATACGTGCCAGAATATGTCATCAGGCTATGGATGCCTGCCCGCTTCCCGGATTGCCATGCGCTTGCGCCAGATCGAAGTCTTCCGCGCCGTGATGCTGACCGGCACCGTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260479/836283‑836152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAC > AM260479/836171‑836260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |