| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 836152 = | 49 (1.790) | 6 (0.230) | 6/202 | 1.6 | 12.2% | coding (21/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 836171 = | 40 (1.550) | coding (2/945 nt) | h16_A0769 | transcriptional regulator, LysR‑family | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCTGCAGCCGGCCGCGCACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAATCCGCG > AM260479/836039‑836283 | cgcggattgcccaatgcgaatacgtgccagaatatgtcatcaggctatggatgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatgctgaccggcaccgtcagcAt > 1:799063‑M2/133‑134 (MQ=255) cTGCAGCCGGCCGCGCACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCa > 1:430640/1‑134 (MQ=255) gCAGCCGGCCGCGCACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACg > 1:560949/1‑134 (MQ=255) gcgcACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGa > 1:477281/1‑134 (MQ=255) gcgcACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGa > 2:1113971/1‑134 (MQ=255) cgcACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGAc > 2:860971/1‑134 (MQ=255) cccGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCg < 2:560949/134‑1 (MQ=255) cccGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCg < 1:464791/134‑1 (MQ=255) gAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTg < 2:3155/132‑1 (MQ=255) cAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCa < 2:430640/134‑1 (MQ=255) aggctatggatgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatgctgaccggcaccgtcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCa < 2:799063‑M2/42‑1 (MQ=255) ctatggatgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatgctgaccggcaccgtcagcATCACGGCGCGGAAGACTTCGAt > 2:1056405‑M2/89‑111 (MQ=255) ctatggatgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatgctgaccggcaccgtcagcATCACGGCGCGGAAGACTTCGAt < 1:1056405‑M2/23‑1 (MQ=255) agGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCa > 1:413221/1‑123 (MQ=255) agGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCa < 2:413221/123‑1 (MQ=255) cacgcgCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCggg > 1:679898/6‑132 (MQ=255) tgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatGCTGACGGTGCCGGTCAGCATCACgg > 2:602145‑M1/63‑88 (MQ=255) tgcctgcccgcttcccggattgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatGCTGACGGTGCCGGTCAGCATCACgg < 1:602145‑M1/26‑1 (MQ=255) gCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 1:140818/134‑1 (MQ=255) gCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 1:1145878/134‑1 (MQ=255) gCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 1:1113971/134‑1 (MQ=255) gcagcaCGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 1:477054/127‑1 (MQ=255) gcagcaCGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg > 2:477054/1‑127 (MQ=255) cgcgcgTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAg < 2:4533/134‑1 (MQ=255) tgccatgcgcttgcgccagatcgaagtcttccgcgccgtgatGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCt < 2:799063‑M1/91‑1 (MQ=255) cgTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGaa < 1:603452/75‑1 (MQ=255) cgTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGaa > 2:603452/1‑75 (MQ=255) tGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCtgat < 1:860971/134‑1 (MQ=255) gACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCAt > 2:760038/1‑121 (MQ=255) gACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCAt < 1:760038/121‑1 (MQ=255) gACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCtgat > 2:548089/1‑133 (MQ=255) ccGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACata < 2:49374/134‑1 (MQ=255) cTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCt < 1:967810/134‑1 (MQ=255) cTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCt < 2:679898/134‑1 (MQ=255) tGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTg > 1:274961/1‑134 (MQ=255) acacGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAc < 1:1043123/134‑1 (MQ=255) atcgaagtcttccgcgccgtgatGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAg < 1:1056405‑M1/88‑1 (MQ=255) atcgaagtcttccgcgccgtgatGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAg > 2:1056405‑M1/24‑111 (MQ=255) acGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAg < 2:244782/111‑1 (MQ=255) acGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAg > 1:244782/1‑111 (MQ=255) tGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTAtt < 2:274961/134‑1 (MQ=255) gcagGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGggcaggca < 2:97521/97‑1 (MQ=255) gcagGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGggcaggca > 1:97521/1‑97 (MQ=255) gcagGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCa > 2:202813/1‑134 (MQ=255) cagGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCAt < 2:477281/134‑1 (MQ=255) cgcgGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCAAT‑GCCCGATGAAATATTCTGGCCAGTATTTGGATTGGGCaa > 1:1151573/1‑134 (MQ=255) ccgtgatgctgaccggcaccgtcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGggcaggca < 1:602145‑M2/62‑1 (MQ=255) ccgtgatgctgaccggcaccgtcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGggcaggca > 2:602145‑M2/27‑88 (MQ=255) ggCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAATc > 1:467144/1‑134 (MQ=255) cTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAAt < 2:419431/130‑1 (MQ=255) cTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAAt > 1:419431/1‑130 (MQ=255) atGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAATCcgcg > 1:799063‑M1/3‑134 (MQ=255) tcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 2:982504‑M2/56‑1 (MQ=255) tcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg > 1:982504‑M2/6‑61 (MQ=255) tcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAc > 2:812783‑M2/6‑95 (MQ=255) tcagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCAc < 1:812783‑M2/90‑1 (MQ=255) cagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg < 2:76011‑M2/56‑1 (MQ=255) cagcATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCggg > 1:76011‑M2/5‑60 (MQ=255) | GCCTGCAGCCGGCCGCGCACCCGCTCGAACAGGCGAAAGCCGAGCGAGGCCTCGGCGTGCTGCAGCACGCGCGTGACCACCGGCTGGGACACGTGCAGCAGGCGCGCGGCCTCGCTGACGGTGCCGGTCAGCATCACGGCGCGGAAGACTTCGATCTGGCGCAAGCGCATGGCAATCCGGGAAGCGGGCAGGCATCCATAGCCTGATGACATATTCTGGCACGTATTCGCATTGGGCAATCCGCG > AM260479/836039‑836283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |