New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1920889 =20 (0.610)5 (0.170) 5/192 2.1 20.0% coding (639/819 nt) h16_B1690 Thioesterase
?AM260480 1920962 = 22 (0.750)coding (712/819 nt) h16_B1690 Thioesterase

GGCCCGCGGCTGGGCTGTCCGGTCACAGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATGGCCGCGCCAGCGCA  >  AM260480/1920833‑1921087
                                                                                                                                 |                                                                                                                             
ggCCCGCGGCTGGGCTGTCCGGTCACAGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCAttt                                                                                                                           <  1:641798/134‑1 (MQ=255)
               tgTCCGGTCACAGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAggc                                                                                                            >  2:539184/1‑134 (MQ=255)
                     gTCACAGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGgcggcg                                                                                                        >  1:434209/1‑132 (MQ=255)
                          aGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACg                                                                                                 >  2:249928/1‑134 (MQ=255)
                                           acgacgTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACg                                                                                <  2:434209/134‑1 (MQ=255)
                                                   cACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCg                                                                         <  1:670895/133‑1 (MQ=255)
                                                   cACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCg                                                                         <  1:249928/133‑1 (MQ=255)
                                                               gcgaacaaccggtggctgcagtcgtgcagggtctcgtcgcgccacgcggccagcatcgcgggcgggCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCAc                                                            >  1:877725‑M2/67‑134 (MQ=255)
                                                               GCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCAc                                                            <  1:732574‑M1/134‑1 (MQ=255)
                                                                cgaacagccggtggctgcagtcgtgcagggtctcgtcgcgccacgcggccagcatcgcgggcgggCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCAc                                                            >  2:337490‑M2/66‑133 (MQ=255)
                                                                 GATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGa                                                          >  1:539184‑M1/1‑134 (MQ=255)
                                                                      tGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATgcgc                                                     >  1:949619/1‑134 (MQ=255)
                                                                         ccGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGcc                                                  <  2:214257/134‑1 (MQ=255)
                                                                           gcgTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGcc                                                  >  1:1062351/1‑132 (MQ=255)
                                                                           gcgTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGcc                                                  <  2:1062351/132‑1 (MQ=255)
                                                                                 cgcgACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCAc                                                                                                                 <  1:770193/63‑1 (MQ=255)
                                                                                 cgcgACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCAc                                                                                                                 >  2:770193/1‑63 (MQ=255)
                                                                                 cgcgACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAgaga                                          >  1:1098234/1‑134 (MQ=255)
                                                                                   gtcgtgcagggtctcgtcgcgccacgcggccagcatcgcgggcgggCATTTCTTCCTGCACGAGgcggcg                                                                                                        <  1:409044‑M2/24‑1 (MQ=255)
                                                                                   gtcgtgcagggtctcgtcgcgccacgcggccagcatcgcgggcgggCATTTCTTCCTGCACGAGgcggcg                                                                                                        >  2:409044‑M2/47‑70 (MQ=255)
                                                                                    gacgaGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCa                                       >  2:804577/1‑134 (MQ=255)
                                                                                      gtgcagggtctcgtcgcgccacgcggccagcatcgcgggcgggCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCAc                                      <  1:337490‑M2/90‑1 (MQ=255)
                                                                                                         aGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTg                                                                                            >  2:96513/1‑60 (MQ=255)
                                                                                                         aGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTg                                                                                            <  1:96513/60‑1 (MQ=255)
                                                                                                         aGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACa                  <  2:1098234/134‑1 (MQ=255)
                                                                                                         aGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACa                  <  1:804577/134‑1 (MQ=255)
                                                                                                            cACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATgg               >  2:751400/1‑134 (MQ=255)
                                                                                                                   tGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATGGCCgcgc         >  1:332166/1‑133 (MQ=255)
                                                                                                                     ttCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATGGCCGCGCCAg      <  2:732574/134‑1 (MQ=255)
                                                                                                                         cgggcgggCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATGGCCGCGCCAGCGCa  >  2:128170‑M2/9‑134 (MQ=255)
                                                                                                                                 |                                                                                                                             
GGCCCGCGGCTGGGCTGTCCGGTCACAGTGCTCGGCGGCAGGGACGACGTCCACGCCCCGCCCGCGATGCTGGCCGCGTGGCGCGACGAGACCCTGCACGACTGCAGCCACCGGCTGTTCGCGGGCGGGCATTTCTTCCTGCACGAGGCGGCGCAGGACGTGCTGGACACCATCACGGATGCCGTGCTCGGTTCCACGATGCGCGCCACCAGAGACCACGGCCATGCGCTCGCCTGACATGGCCGCGCCAGCGCA  >  AM260480/1920833‑1921087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.