| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 45 [0] | [0] 45 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 42 (1.710) | 29/192 | 0.1 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
AGCCAGGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTCA > AM260479/973707‑973968 | agccagGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtc > 1:595435‑M1/1‑131 (MQ=255) gccagGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaa < 1:62295‑M1/134‑5 (MQ=255) tctGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgac > 2:468330‑M1/1‑123 (MQ=255) tGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgac < 2:10772‑M1/132‑12 (MQ=255) ggCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtc > 1:253581‑M1/1‑111 (MQ=255) ggCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtc > 2:345995‑M1/1‑111 (MQ=255) aCCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtc < 2:595435‑M1/134‑39 (MQ=255) cccAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagtt < 1:1109578‑M1/123‑29 (MQ=255) cccAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagtt > 2:1109578‑M1/1‑95 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaa > 2:579090‑M1/1‑90 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaa > 1:1141377‑M1/1‑90 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac > 2:398410‑M1/1‑88 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac > 2:518135‑M1/1‑88 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:774053‑M1/133‑53 (MQ=255) gggTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgt < 2:253581‑M1/133‑55 (MQ=255) aaCCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtg > 1:984218‑M1/1‑70 (MQ=255) aaCCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtg < 2:984218‑M1/106‑37 (MQ=255) aCCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatata < 1:579090‑M1/134‑66 (MQ=255) gccgccTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgc < 1:345995‑M1/132‑73 (MQ=255) ccTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttc < 1:518135‑M1/134‑79 (MQ=255) ccTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttc < 2:748378‑M1/134‑79 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccag > 1:359347‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:403246‑M1/90‑53 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:152816‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:403246‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:152816‑M1/90‑53 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac > 2:1129677‑M1/1‑37 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac < 1:1129677‑M1/82‑46 (MQ=255) tgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagta < 2:193641‑M1/132‑98 (MQ=255) cgcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 2:615924‑M1/1‑33 (MQ=255) cgcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:615924‑M1/85‑53 (MQ=255) cgcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaacca > 2:122776‑M1/1‑33 (MQ=255) cgcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaacca < 1:122776‑M1/80‑48 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgacct > 1:890951‑M1/1‑31 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 2:581799‑M1/1‑31 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:581799‑M1/83‑53 (MQ=255) gcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgtttt > 2:891567‑M1/1‑21 (MQ=255) gcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgtttt < 1:891567‑M1/98‑78 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtc < 1:108355‑M1/121‑108 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtc > 2:108355‑M1/1‑14 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtg < 2:846144‑M1/85‑72 (MQ=255) gTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtg > 1:846144‑M1/1‑14 (MQ=255) aaGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaaggagcgccaccgt < 2:359347‑M1/134‑126 (MQ=255) aaGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaaggagcgccaccgt < 1:468330‑M1/134‑126 (MQ=255) gCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaaggagcgccaccgtgggcgc < 1:398410‑M1/133‑132 (MQ=255) | AGCCAGGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCGTCCGGGAAGTCGACTTCA > AM260479/973707‑973968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |