| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 45 [0] | [0] 45 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 42 (1.710) | 29/192 | 0.1 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
AGGCCCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGGCGC > AM260479/975027‑975288 | agccaggctctggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTc > 1:595435‑M2/132‑133 (MQ=255) gccaggctctggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCaa < 1:62295‑M2/4‑1 (MQ=255) tctggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAc > 2:468330‑M2/124‑134 (MQ=255) tggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAc < 2:10772‑M2/11‑1 (MQ=255) ggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTc > 1:253581‑M2/112‑134 (MQ=255) ggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTc > 2:345995‑M2/112‑134 (MQ=255) acccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTc < 2:595435‑M2/38‑1 (MQ=255) cccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGtt < 1:1109578‑M2/28‑1 (MQ=255) cccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGtt > 2:1109578‑M2/96‑123 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCaaa > 2:579090‑M2/91‑134 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCaaa > 1:1141377‑M2/91‑134 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc > 2:398410‑M2/89‑133 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc > 2:518135‑M2/89‑133 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:774053‑M2/52‑1 (MQ=255) gggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGt < 2:253581‑M2/54‑1 (MQ=255) aaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCgtg > 1:984218‑M2/71‑106 (MQ=255) aaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCgtg < 2:984218‑M2/36‑1 (MQ=255) accatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGAtata < 1:579090‑M2/65‑1 (MQ=255) gccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGc < 1:345995‑M2/72‑1 (MQ=255) cctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTttc < 1:518135‑M2/78‑1 (MQ=255) cctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTttc < 2:748378‑M2/78‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:152816‑M2/39‑90 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:403246‑M2/52‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:152816‑M2/52‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:403246‑M2/39‑90 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAg > 1:359347‑M2/39‑133 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc < 1:1129677‑M2/45‑1 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc > 2:1129677‑M2/38‑82 (MQ=255) tgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTa < 2:193641‑M2/97‑1 (MQ=255) cgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCa < 1:122776‑M2/47‑1 (MQ=255) cgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCa > 2:122776‑M2/34‑80 (MQ=255) cgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 2:615924‑M2/34‑85 (MQ=255) cgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:615924‑M2/52‑1 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 2:581799‑M2/32‑83 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:581799‑M2/52‑1 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCt > 1:890951‑M2/32‑134 (MQ=255) gcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGtttt > 2:891567‑M2/22‑98 (MQ=255) gcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGtttt < 1:891567‑M2/77‑1 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGtgtg < 2:846144‑M2/71‑1 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGtgtg > 1:846144‑M2/15‑85 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTc < 1:108355‑M2/107‑1 (MQ=255) gttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTc > 2:108355‑M2/15‑121 (MQ=255) aaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGt < 2:359347‑M2/125‑1 (MQ=255) aaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGt < 1:468330‑M2/125‑1 (MQ=255) gcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGgcgc < 1:398410‑M2/131‑1 (MQ=255) | AGGCCCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAGGAGCGCCACCGTGGGCGC > AM260479/975027‑975288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |