Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260480	633588	633660	73	4 [3]	[2] 4	[fliR]–[fliQ]	[fliR],[fliQ]

CATCGCGGACAGCGCGATCTTGGCGCGGCGCGGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAGGTGAATTCGACCACGGCGGGGA  >  AM260480/633454‑633608                                                                                                                                      |                      cATCGCGGACAGCGCGATCTTGGCGCGGCGCGGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAgg                       >  1:1139012/1‑134 (MQ=255)              gcgATCTTGGCGCGGCGCGGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAGGTGAATTCGACCAc          <  2:1139012/134‑1 (MQ=255)                      ggcgcggcgcGGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAGGTGAATTCGACCAcgg        <  2:978650/128‑1 (MQ=255)                       gcgcggcgcgGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAGGTGAATTCGACCACGGCGGGGa  <  1:270409/133‑1 (MQ=255)                                                                                                                                      |                      CATCGCGGACAGCGCGATCTTGGCGCGGCGCGGGATGGTGGACTCACCGAACAGCGGCGCGGTGCCGATCAGGGCCAGGATGCGGAAGAAAGGCCACAGGAACGCCGCGAGCCAGCTGTAGAGCTGGGCTGAGGTGAATTCGACCACGGCGGGGA  >  AM260480/633454‑633608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑