Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260480	633588	633660	73	4 [3]	[2] 4	[fliR]–[fliQ]	[fliR],[fliQ]

CGCGGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGCCCCGCCAGC  >  AM260480/633660‑633729  |                                                                     cgcgGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGccc         >  1:558643/1‑63 (MQ=255) cgcgGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGccc         <  2:558643/63‑1 (MQ=255)  gcgGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGCCCCGCCAGc  <  1:331161/69‑1 (MQ=255)  gcgGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGCCCCGCCAGc  >  2:331161/1‑69 (MQ=255)  |                                                                     CGCGGGAATGCTCTGGAACACCTCGCGCATGTAGTCGACCATGGAATTGATCATCCACGGCCCCGCCAGC  >  AM260480/633660‑633729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑