New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	104029 =	16 (0.620)	4 (0.170)	4/194	1.8	23.9%	coding (825/945 nt)	h16_A0090	transcriptional regulator, LysR‑family
	?	AM260479	104096 =	11 (0.470)					coding (892/945 nt)	h16_A0090	transcriptional regulator, LysR‑family

GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/104089‑104029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/104096‑104220                                                                                                                                                                                            GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATT                                                      >  2:538130/1‑134                   GATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAC                                        <  1:299835/130‑1                   GATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAC                                        >  2:299835/1‑130                     TATCGAGCGCCAGGTCGCCGCCATCATCGCT‑‑GCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                >  1:196026/1‑134                                                     CGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  2:743329/1‑134                                                     CGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGC    <  1:538130/132‑1                                                          GCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                <  1:263598/99‑1                                                          GCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                >  2:263598/1‑99                                                                                                                                                                                            GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/104089‑104029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/104096‑104220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.