New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 104029 =16 (0.620)4 (0.170) 4/194 1.8 23.9% coding (825/945 nt) h16_A0090 transcriptional regulator, LysR‑family
?AM260479 104096 = 11 (0.470)coding (892/945 nt) h16_A0090 transcriptional regulator, LysR‑family

GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/104089‑104029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/104096‑104220
                                                                                                                                                                                          
GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATT                                                      >  2:538130/1‑134
                  GATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAC                                        <  1:299835/130‑1
                  GATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAC                                        >  2:299835/1‑130
                    TATCGAGCGCCAGGTCGCCGCCATCATCGCT‑‑GCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                >  1:196026/1‑134
                                                    CGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  2:743329/1‑134
                                                    CGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGC    <  1:538130/132‑1
                                                         GCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                <  1:263598/99‑1
                                                         GCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTG                                >  2:263598/1‑99
                                                                                                                                                                                          
GCGCGGGCGGTACAGGCGGATATCGAGCGCCAGGTCGCCGCCATCATCGCTGCGCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/104089‑104029
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/104096‑104220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.