New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	104029 =	16 (0.620)	4 (0.170)	4/194	1.8	23.9%	coding (825/945 nt)	h16_A0090	transcriptional regulator, LysR‑family
	?	AM260479	104096 =	11 (0.470)					coding (892/945 nt)	h16_A0090	transcriptional regulator, LysR‑family

GGCTGCCGGCACGCCTGATTGCCGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/103968‑104220                                                                                                                                 |                                                                                                                             ggcTGCCGGCACGCCTGATTGCCGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATgcgc                                                                                                                         >  2:887655/1‑134 (MQ=255)  gcTGCCGGCACGCCTGATTGCCGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATgcg                                                                                                                          <  2:41812/132‑1 (MQ=255)                      ccGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCt                                                                                                                    <  1:237725/118‑1 (MQ=255)                      ccGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCt                                                                                                                    >  2:237725/1‑118 (MQ=255)                      ccGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTgg                                                                                                    <  2:804108/134‑1 (MQ=255)                                        ggCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCa                                                                                  <  2:749045/134‑1 (MQ=255)                                                    gtgcCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATgc                                                                      >  2:186005/1‑134 (MQ=255)                                                                    gcgcgggcggtacaggcggatatcgagcgccaggtcgccgccatcatcgctgcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCAtt                                                      >  2:538130‑M2/62‑134 (MQ=255)                                                                                      gatatcgagcgccaggtcgccgccatcatcgctgcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAc                                        <  1:299835‑M2/87‑1 (MQ=255)                                                                                      gatatcgagcgccaggtcgccgccatcatcgctgcgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAAc                                        >  2:299835‑M2/44‑130 (MQ=255)                                                                                      cgACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGcc                                    <  1:186005/134‑1 (MQ=255)                                                                                          tatcgagcgccaggtcgccgccatcatcgctgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTg                                >  1:196026‑M2/40‑134 (MQ=255)                                                                                                                 ccgcccgcGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGt         <  1:887655/134‑1 (MQ=255)                                                                                                                  cgcccgcGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTTGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGtt        >  2:987408/1‑134 (MQ=255)                                                                                                                   gcccgcGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTTGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTc       <  1:987408/134‑1 (MQ=255)                                                                                                                        cgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCcgc    <  1:538130‑M2/123‑1 (MQ=255)                                                                                                                        cgcgcgccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCgcgc  >  2:743329‑M2/10‑134 (MQ=255)                                                                                                                             gccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTg                                >  2:263598‑M2/5‑99 (MQ=255)                                                                                                                             gccgATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTg                                <  1:263598‑M2/95‑1 (MQ=255)                                                                                                                                 |                                                                                                                             GGCTGCCGGCACGCCTGATTGCCGACGACCTGCACGCCGGGCGCCTGGTGCGTGCCATCAGCGGCGCGCGCAGCGATGATGGCGGCGACCTGGCGCTCGATATCCGCCTGTACCGCCCGCGCGCGCCGATGCGCCCGCTGGCCGAGGCTTTCTGGCAGGCGGCGGTGCAGGCACCGCGCTGATGCGCCTTCGGCCACCATTGCCGAATCGGCAACCGCCCTTGCCAAAGCTGCACGCCGGGCCGGTTCCGCGC  >  AM260479/103968‑104220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.