New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	564305 =	11 (0.430)	3 (0.120)	3/204	2.2	21.1%	coding (156/1593 nt)	h16_A0537	Uncharacterized protein conserved in bacteria
	?	AM260479	564328 =	12 (0.490)					coding (179/1593 nt)	h16_A0537	Uncharacterized protein conserved in bacteria

GCGGCGCTCAGCGCCGCATCCACGCGTGCGGCAGCGTCCGGCGGCAATGCTGGCCCGCTGGCGGCCTGGGCCACGGGCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/564442‑564305 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGCCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCT  >  AM260479/564328‑564457                                                                                                                                                                                                                                                                              GCGGCGCTCAGCGCCGCATCCACGCGTGCGGCAGCGTCCGGCGGCAATGCTGGCCCGCTGGCGGCCTGGGCCACGGCCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGC                                                                                                                                        <  2:357010/134‑1            CGCCGCATCCACGCGTGCGGCAGCGTCCGGCGGCAATGCTGGCCCGCTGGCGGCCTGGGCCACGGCCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGCGGCCTCGACCC                                                                                                                             <  2:170966/134‑1                                                                   TGGGCCACGGCCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGCGGCCTCGACCCGCGCGACTACGATG                                                                                                               >  1:191484/1‑93                                                                   TGGGCCACGGCCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGCGGCCTCGACCCGCGCGACTACGATG                                                                                                               <  2:191484/93‑1                                                                                                                                       GGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCT  <  2:477417/134‑1                                                                                                                                                                                                                                                                              GCGGCGCTCAGCGCCGCATCCACGCGTGCGGCAGCGTCCGGCGGCAATGCTGGCCCGCTGGCGGCCTGGGCCACGGGCTGGCGCAAGGCGTCGGCATCGTAGTCGCGCGGGTCGAGGCCGTCGGCCGCGGCCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/564442‑564305 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGCCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCT  >  AM260479/564328‑564457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.