New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	564305 =	11 (0.430)	3 (0.120)	3/204	2.2	21.1%	coding (156/1593 nt)	h16_A0537	Uncharacterized protein conserved in bacteria
	?	AM260479	564328 =	12 (0.490)					coding (179/1593 nt)	h16_A0537	Uncharacterized protein conserved in bacteria

TGCTTGCCTGTGCCGCCGCATGCCAGGCCACGCCTGCCTTCGCCAACGAACCGATGTGGTTTGCGCAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGCCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCT  >  AM260479/564196‑564457                                                                                                                                     |                                                                                                                                  tGCTTGCCTGTGCCGCCGCATGCCAGGCCACGCCTGCCTTCGCCAACGAACCGATGTGGTTTGCGCAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTc                                                                                                                                  <  1:931160/134‑1 (MQ=255)      cgccgcatccacgcgtgcggcagcgtccggcggcaatgctggcccgctggcggcctgggccacggcctggcgcaaggcgtcggcatcgtagtcgcgcgggtcgaggccgtcggccgcggccgcggccTCGAccc                                                                                                                             <  2:170966‑M2/7‑1 (MQ=255)            gccgccGCATGCCAGGCCACGCCTGCCTTCGCCAACGAACCGATGTGGTTTGCGCAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGa                                                                                                                       >  1:867964/1‑134 (MQ=255)                   cATGCCAGGCCACGCCTGCCTTCGCCAACGAACCGATGTGGTTTGCGCAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGAt                                                                                                                <  2:867964/134‑1 (MQ=255)                                                             tgggccacggcctggcgcaaggcgtcggcatcgtagtcgcgcgggtcgaggccgtcggccgcggccgcggccTCGACCCGCGCGACTACGATg                                                                                                               >  1:191484‑M2/73‑93 (MQ=255)                                                             tgggccacggcctggcgcaaggcgtcggcatcgtagtcgcgcgggtcgaggccgtcggccgcggccgcggccTCGACCCGCGCGACTACGATg                                                                                                               <  2:191484‑M2/21‑1 (MQ=255)                                                                  cAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTg                                                                                                    <  1:228705/99‑1 (MQ=255)                                                                  cAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTg                                                                                                    >  2:228705/1‑99 (MQ=255)                                                                    gggCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGa                                                                                                                                <  2:18546/69‑1 (MQ=255)                                                                    gggCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGa                                                                                                                                >  1:18546/1‑69 (MQ=255)                                                                         gACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGa                                                                                                           <  1:388637/85‑1 (MQ=255)                                                                         gACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGa                                                                                                           >  2:388637/1‑85 (MQ=255)                                                                                         catcgtagtcgcgcgggtcgaGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCa                                                                                   >  1:191484‑M1/22‑93 (MQ=255)                                                                                         catcgtagtcgcgcgggtcgaGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCa                                                                                   <  2:191484‑M1/72‑1 (MQ=255)                                                                                                       gggtcgaGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATgcggcg                            <  2:170966‑M1/127‑1 (MQ=255)                                                                                                            cTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAg                       <  1:424834/134‑1 (MQ=255)                                                                                                                  GCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGcgccgc                 <  2:357010‑M1/134‑1 (MQ=255)                                                                                                                             cgACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGAt              <  1:656563/126‑1 (MQ=255)                                                                                                                             cgACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGAt              >  2:656563/1‑126 (MQ=255)                                                                                                                                 ggccTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGGCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCt  <  2:477417‑M2/130‑1 (MQ=255)                                                                                                                                     |                                                                                                                                  TGCTTGCCTGTGCCGCCGCATGCCAGGCCACGCCTGCCTTCGCCAACGAACCGATGTGGTTTGCGCAGGGCCGACCGGTGCCGGCGGCCCGCCAGGCCGTCGATGCGCTGGCCGCGGCCGCGGCCGACGGCCTCGACCCGCGCGACTACGATGCCGACGCCTTGCGCCAGCCCGTGGCCCAGGCCGCCAGCGGGCCAGCATTGCCGCCGGACGCTGCCGCACGCGTGGATGCGGCGCTGAGCGCCGCGATGGAGCGGATGCT  >  AM260479/564196‑564457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.