New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 254684114 (0.540)5 (0.210) 3/200 2.2 23.8% coding (840/1467 nt) argAB acetylglutamate kinase and acetyltransferase
?AM260479 = 2546916 19 (0.790)coding (915/1467 nt) argAB acetylglutamate kinase and acetyltransferase

GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2546781‑2546841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  <  AM260479/2546916‑2546795
                                                                                                                                                                                       
GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             >  1:103388/1‑124
GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             >  1:628047/1‑124
GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             <  2:103388/124‑1
GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             <  2:628047/124‑1
                                                 CTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  >  2:228951/1‑134
                                                                                                                                                                                       
GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2546781‑2546841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  <  AM260479/2546916‑2546795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.