New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2546841	14 (0.540)	5 (0.210)	3/200	2.2	23.8%	coding (840/1467 nt)	argAB	acetylglutamate kinase and acetyltransferase
	?	AM260479	= 2546916	19 (0.790)					coding (915/1467 nt)	argAB	acetylglutamate kinase and acetyltransferase

GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2546781‑2546841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  <  AM260479/2546916‑2546795                                                                                                                                                                                         GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             >  1:103388/1‑124 GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             >  1:628047/1‑124 GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             <  2:103388/124‑1 GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTG                                                             <  2:628047/124‑1                                                  CTGCGCACCGCCCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  >  2:228951/1‑134                                                                                                                                                                                         GGTGCCGGGCGTGCCCGATCCGGTCGGCAAGATGATGCAGGAAATGTCCCTGCGCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/2546781‑2546841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgccCTTGAGCGCCTTGACCAGGTGCTGCAGGTAGTTGGCCACGTCCGGCGGCAGATGGTTGTTTTGCAGGCGCTCCACGGCGGTGCGCAGGGACATTTCCTGCATCATCTTGCCGACCGGATCGG  <  AM260479/2546916‑2546795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.