New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2807997 =	12 (0.470)	3 (0.130)	3/194	2.1	20.1%	coding (964/2850 nt)	kdpD1	Osmosensitive K+ channel histidine kinase
	?	AM260479	2808050 =	13 (0.560)					coding (911/2850 nt)	kdpD1	Osmosensitive K+ channel histidine kinase

AGCGCGCGCCGGCTGGCCGGGCAGCTCGATTGCGACTGCCATGTGGTGACGGTGTCGGTGCCGCGCCTGGCACCCGTGCCCGACGCCCAGCGCGAGCAGCTCGACCAGGCCATGCGGTTGGCCGAGGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2808132‑2807997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgggcgTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  >  AM260479/2808050‑2808165                                                                                                                                                                                                                                                              AGCGCGCGCCGGCTGGCCTGGCAGCTCGATTGCGACTGCCATGTGGTGACGGTGTCGGTGCCGCGCCTGGCACCCGTGCCCGACGCCCAGCGCGAGCAGCTCGACCAGGCCATGCGGTTGGCCGAGGCGCTGGG                                                                                                                        >  1:211545/1‑134                                                                                      CCCAGCGCGAGCAGCTCGACCAGGCCATGCGGTTGGCCGAGGCGCTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCT                                   <  1:708930/134‑1                                                                                               AGCAGCTCGACCAGGCCATGCGGTTGGCCGAGGCGCTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCAC                          >  1:1006706/1‑134                                                                                                                        GGCCGAGGCGCTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  <  2:1006706/133‑1                                                                                                                                 GCTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  >  1:955373/1‑124                                                                                                                                 GCTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  <  2:955373/124‑1                                                                                                                                  CTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  >  1:829269/1‑123                                                                                                                                  CTGGGCGTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  <  2:829269/123‑1                                                                                                                                                                                                                                                              AGCGCGCGCCGGCTGGCCGGGCAGCTCGATTGCGACTGCCATGTGGTGACGGTGTCGGTGCCGCGCCTGGCACCCGTGCCCGACGCCCAGCGCGAGCAGCTCGACCAGGCCATGCGGTTGGCCGAGGCGCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2808132‑2807997 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctgggcgTCGGGCACGGGTGCCAGGCGCGGCACCGACACCGTCACCACATGGCAGTCGCAATCGAGCTGCCCGGCCAGCCGGCGCGCGCTGCGCACCACCTGCGCAGCATCGCTGCCGTGGCC  >  AM260479/2808050‑2808165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.