New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	300922 =	18 (0.650)	4 (0.160)	4/194	2.0	20.9%	coding (481/744 nt)	flgF	flagellar basal body rod protein
	?	AM260480	301006 =	14 (0.560)					coding (565/744 nt)	flgF	flagellar basal body rod protein

CTTCCAGCGCGCCCGAGATCACGCGCACGGTGGGATCGGCCTCCAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/301051‑300922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcagccgCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAGGCAGCAACGTCAACCCGACCGAAGCCATGGTC  >  AM260480/301006‑301083                                                                                                                                                                                                                  CTTCCAGCGCGCCCGAGATCACGCGCACGGTGGGATCGGCCTCCAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCGCTGG                                                                            <  2:514125/134‑1     CAGCGCGCCCGAGATCACGCGCACGGTGGGATCGGCCTCCAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGC                                                                                  >  1:43483/1‑124     CAGCGCGCCCGAGATCACGCGCACGGTGGGATCGGCCTCCAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGC                                                                                  <  2:43483/124‑1                                            CAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAG                                  <  2:781651/133‑1                                                                  AGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAGGCAGCAACGTCAACCCGACCGAA           <  2:826574/134‑1                                                                            GGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAGGCAGCAACGTCAACCCGACCGAAGCCATGGTC  >  2:497223/1‑133                                                                                                                                                                                                                  CTTCCAGCGCGCCCGAGATCACGCGCACGGTGGGATCGGCCTCCAGCGGCTGCGCGCCGGGACGCAGGCGGAACAGGCCGTCATCGCCGCGCGCGATGGCGTCGTTGGGCGGGTTGACCACGCGCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/301051‑300922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcagccgCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAGGCAGCAACGTCAACCCGACCGAAGCCATGGTC  >  AM260480/301006‑301083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.