New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	300922 =	18 (0.650)	4 (0.160)	4/194	2.0	20.9%	coding (481/744 nt)	flgF	flagellar basal body rod protein
	?	AM260480	301006 =	14 (0.560)					coding (565/744 nt)	flgF	flagellar basal body rod protein

CGGCCTGCCGGTGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAG  >  AM260480/300792‑301051                                                                                                                                   |                                                                                                                                  cGGCCTGCCGGTGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGc                                                                                                                                >  2:936787/1‑134 (MQ=255)  ggCCTGCCGGTGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCt                                                                                                                               >  2:279994/1‑134 (MQ=255)  ggCCTGCCGGTGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCt                                                                                                                               >  2:163852/1‑134 (MQ=255)            tGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTc                                                                                                                     <  1:163852/134‑1 (MQ=255)                                    cGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAAccc                                                                                                                >  1:416736/1‑115 (MQ=255)                                    cGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAAccc                                                                                                                <  2:416736/115‑1 (MQ=255)                                        gccgccGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATcgcgcgcg                                                                                         >  2:1010434/1‑134 (MQ=255)                                               ggCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGc                                                                                                                                <  1:515179/88‑1 (MQ=255)                                               ggCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGc                                                                                                                                >  2:515179/1‑88 (MQ=255)                                               ggCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGa                                                                                  >  2:1023614/1‑134 (MQ=255)                                                     gaccatggcttcggtcgggttgacgttgctgccttccagcgcgcccgagatcacgcgcacggtgggatcggcctccagCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGcc                                                                             >  2:497223‑M1/79‑133 (MQ=255)                                                              ttcggtcgggttgacgttgctgccttccagcgcgcccgagatcacgcgcacggtgggatcggcctccagCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCt                                                                   <  2:826574‑M1/65‑1 (MQ=255)                                                                      cGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCg                                                                >  1:399636/1‑129 (MQ=255)                                                                      cGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCg                                                                <  2:399636/129‑1 (MQ=255)                                                                                 tCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCgg                                                          >  2:386646/1‑124 (MQ=255)                                                                                 tCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCgg                                                          <  1:386646/124‑1 (MQ=255)                                                                                 tCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCg                                                <  1:1010434/134‑1 (MQ=255)                                                                                   aCCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCt                                              <  2:927624/134‑1 (MQ=255)                                                                                     cttccagcgcgcccgagatcacgcgcacggtgggatcggcctccagCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTg                                             <  2:781651‑M1/87‑1 (MQ=255)                                                                                                            ctGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGt                      >  2:122866/1‑133 (MQ=255)                                                                                                                cGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGAtct                 <  1:1023614/134‑1 (MQ=255)                                                                                                                               ccagCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAg  <  2:514125‑M1/130‑1 (MQ=255)                                                                                                                                   |                                                                                                                                  CGGCCTGCCGGTGATGGGCGATGGCGGTCCGCTGGCGGTGCCGCCGGGCTCGCAGGTGACCATCGGCACCGACGGCACCATCACCGCGCGCGGCCCCGGCGAAGCCTCTGCCGGCCTGGCGCAGGTGGGCCGGCTGCGCGTGGTCAACCCGCCCAACGACGCCATCGCGCGCGGCGATGACGGCCTGTTCCGCCTGCGTCCCGGCGCGCAGCCGCTGGAGGCCGATCCCACCGTGCGCGTGATCTCGGGCGCGCTGGAAG  >  AM260480/300792‑301051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.