New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1059377 =	14 (0.510)	3 (0.120)	3/194	2.2	21.7%	coding (860/1179 nt)	h16_B0938	Acyl‑CoA dehydrogenase
	?	AM260480	1059425 =	9 (0.360)					coding (908/1179 nt)	h16_B0938	Acyl‑CoA dehydrogenase

GACCGTCGCCAGCACCGCGCGCGCGGCCAGCGTGCGGGCGCACATGATGCGGTTGGTGGTGACCGCGCCCGGCGCCTGCCCCGATGCCGCCGCGAACATCGCATCCAGCGCCAGCTGCGCGGCATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1059504‑1059377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcggGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCC  >  AM260480/1059425‑1059468                                                                                                                                                                              GACCGTCGCCAGCACCGCGCGCGCGGCCAGCGTGCGGGCGCACATGATGCGGTTGGTCGTGACCGCGCCCGGCGCCTGCCCCGATGCCGCCGCGAACATCGCATCCAGCGCCAGCTGCGCGGCATCGGGGCAG                                         <  2:503296/133‑1                                                                                  CGATGCCGCCGCGAACATCGCATCCAGCGCCAGCTGCGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCC  <  1:1008231/91‑1                                                                                  CGATGCCGCCGCGAACATCGCATCCAGCGCCAGCTGCGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCC  >  2:1008231/1‑91                                                                                                                                                                              GACCGTCGCCAGCACCGCGCGCGCGGCCAGCGTGCGGGCGCACATGATGCGGTTGGTGGTGACCGCGCCCGGCGCCTGCCCCGATGCCGCCGCGAACATCGCATCCAGCGCCAGCTGCGCGGCATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1059504‑1059377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcggGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCC  >  AM260480/1059425‑1059468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.