New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1059377 =	14 (0.510)	3 (0.120)	3/194	2.2	21.7%	coding (860/1179 nt)	h16_B0938	Acyl‑CoA dehydrogenase
	?	AM260480	1059425 =	9 (0.360)					coding (908/1179 nt)	h16_B0938	Acyl‑CoA dehydrogenase

TCGGCGTGGCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCCCGCACGCTGGCCGCGCGCGCGGTGCTGGCGACGGTC  >  AM260480/1059275‑1059504                                                                                                       |                                                                                                                                tCGGCGTGGCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCcgcg                                                                                                                       >  1:388916/1‑113 (MQ=255) tCGGCGTGGCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCcgcg                                                                                                                       <  2:388916/113‑1 (MQ=255)         gCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGcc                                                                                                                                <  1:451702/96‑1 (MQ=255)         gCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGcc                                                                                                                                >  2:451702/1‑96 (MQ=255)         gCCGAGGCCGCGCGCGATATCGCACTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTcg                                                                                              >  2:781464/1‑130 (MQ=255)         gCCGAGGCCGCGCGCGATATCGCACTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTcg                                                                                              <  1:781464/130‑1 (MQ=255)                               cgcTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGgc                                                                    <  1:949795/134‑1 (MQ=255)                                      gCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGc                                                                                                                           >  1:665770/1‑72 (MQ=255)                                      gCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGc                                                                                                                           <  2:665770/72‑1 (MQ=255)                                        tGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTcac                                                            >  1:819548/1‑133 (MQ=255)                                          gcgcgcCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTcaccac                                                         <  2:819548/134‑1 (MQ=255)                                                  gcggcgCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGgc                                                                                                               <  1:68312/72‑1 (MQ=255)                                                  gcggcgCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGgc                                                                                                               >  2:68312/1‑72 (MQ=255)                                                           ggcgcacatgatgcggttggtggtgaccgcgcccggcgcctgccCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCg                                                                                   <  1:1008231‑M1/47‑1 (MQ=255)                                                           ggcgcacatgatgcggttggtggtgaccgcgcccggcgcctgccCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCg                                                                                   >  2:1008231‑M1/45‑91 (MQ=255)                                                                                 gccgGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCCCGCACGCTGGCcgcgcgcgc                  >  1:44506/1‑134 (MQ=255)                                                                                                  ctgccCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACGACCAACCGCATCATGTGCGCCCGCACGCTGGCCGCGCGCGCGGTGCTGGCGACGGTc  <  2:503296‑M1/128‑1 (MQ=255)                                                                                                       |                                                                                                                                TCGGCGTGGCCGAGGCCGCGCGCGATATCGCGCTGCAGCTGGCGCGCCAGCGGCGCCTGAGCGCACATGCGGTGGAAGCCGCCGGGCGCCTGTGCAACGAGGCCGATGCCGCGCAGCTGGCGCTGGATGCGATGTTCGCGGCGGCATCGGGGCAGGCGCCGGGCGCGGTCACCACCAACCGCATCATGTGCGCCCGCACGCTGGCCGCGCGCGCGGTGCTGGCGACGGTC  >  AM260480/1059275‑1059504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.