| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1682275 = | 18 (0.650) | 4 (0.160) | 4/194 | 2.0 | 24.0% | coding (910/1269 nt) | frcR | transcriptional regulator, NagC‑family |
| ? | AM260480 | 1682359 = | 9 (0.360) | coding (994/1269 nt) | frcR | transcriptional regulator, NagC‑family | |||||
CCGTCGATATCGGCATCGAAGATCACCAGCGGCACGTCGAGCACGGCGAGGGCGGACTGCAGCGCCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1682414‑1682275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAT > AM260480/1682359‑1682400 CCGTCGATATCGGCATCGAAGATCACCAGCGGCACGTCGAGCACGGCGAGGGCGGACTGCAGCGCCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCG > 2:493447/1‑134 GACTGCAGCGCCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTGC > 1:464526/1‑84 GACTGCAGCGCCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTGC < 2:464526/84‑1 CCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTG > 1:130764/1‑73 CCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTG < 2:130764/73‑1 GTGGCCCAGCTCGACCTGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAT < 1:1019884/69‑1 GTGGCCCAGCTCGACCTGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAT > 2:1019884/1‑69 TCGACCTGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACG < 1:247524/39‑1 TCGACCTGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACG > 2:247524/1‑39 CCGTCGATATCGGCATCGAAGATCACCAGCGGCACGTCGAGCACGGCGAGGGCGGACTGCAGCGCCGGCGCCAGCGCATCGACGCAGTCGGCAATCCATTCCTCGACCGCGGGGTGGCCCAGCTCGACCTGGCGCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1682414‑1682275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAT > AM260480/1682359‑1682400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |