New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1682275 =	18 (0.650)	4 (0.160)	4/194	2.0	24.0%	coding (910/1269 nt)	frcR	transcriptional regulator, NagC‑family
	?	AM260480	1682359 =	9 (0.360)					coding (994/1269 nt)	frcR	transcriptional regulator, NagC‑family

CAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCT  >  AM260480/1682259‑1682444                                                                                                     |                                                                                      cAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGa                                                      >  1:493447/1‑134 (MQ=255)      gCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTc                                                 <  2:245959/134‑1 (MQ=255)                   GCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTc                                                                                      >  1:464526‑M1/1‑84 (MQ=255)                   GCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTc                                                                                      <  2:464526‑M1/84‑1 (MQ=255)                       CGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAcgg                                >  2:493447‑M1/1‑134 (MQ=255)                                                cgGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAc                                  <  1:563141/107‑1 (MQ=255)                                                cgGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAc                                  >  2:563141/1‑107 (MQ=255)                                                 ggTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTgcgc      <  2:165544/134‑1 (MQ=255)                                                     gAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTgg                        >  1:204266/1‑112 (MQ=255)                                                     gAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTgg                        <  2:204266/112‑1 (MQ=255)                                                                          gtggcccagctcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAt                                              <  1:1019884‑M2/42‑1 (MQ=255)                                                                          gtggcccagctcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAt                                              >  2:1019884‑M2/28‑69 (MQ=255)                                                                                    tcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACg                                                                  <  1:247524‑M2/22‑1 (MQ=255)                                                                                    tcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACg                                                                  >  2:247524‑M2/18‑39 (MQ=255)                                                                                    tGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCt  <  1:394873/103‑1 (MQ=255)                                                                                    tGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCt  >  2:394873/1‑103 (MQ=255)                                                                                                     |                                                                                      CAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCT  >  AM260480/1682259‑1682444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.