New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1682275 =18 (0.650)4 (0.160) 4/194 2.0 24.0% coding (910/1269 nt) frcR transcriptional regulator, NagC‑family
?AM260480 1682359 = 9 (0.360)coding (994/1269 nt) frcR transcriptional regulator, NagC‑family

CAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCT  >  AM260480/1682259‑1682444
                                                                                                    |                                                                                     
cAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGa                                                      >  1:493447/1‑134 (MQ=255)
     gCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTc                                                 <  2:245959/134‑1 (MQ=255)
                  GCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTc                                                                                      >  1:464526‑M1/1‑84 (MQ=255)
                  GCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTc                                                                                      <  2:464526‑M1/84‑1 (MQ=255)
                      CGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAcgg                                >  2:493447‑M1/1‑134 (MQ=255)
                                               cgGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAc                                  <  1:563141/107‑1 (MQ=255)
                                               cgGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGAc                                  >  2:563141/1‑107 (MQ=255)
                                                ggTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTgcgc      <  2:165544/134‑1 (MQ=255)
                                                    gAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTgg                        >  1:204266/1‑112 (MQ=255)
                                                    gAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTgg                        <  2:204266/112‑1 (MQ=255)
                                                                         gtggcccagctcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAt                                              <  1:1019884‑M2/42‑1 (MQ=255)
                                                                         gtggcccagctcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGAt                                              >  2:1019884‑M2/28‑69 (MQ=255)
                                                                                   tcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACg                                                                  <  1:247524‑M2/22‑1 (MQ=255)
                                                                                   tcgacctggcgctgcagTCCGCCCTCGCCGTGCTCGACg                                                                  >  2:247524‑M2/18‑39 (MQ=255)
                                                                                   tGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCt  <  1:394873/103‑1 (MQ=255)
                                                                                   tGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCt  >  2:394873/1‑103 (MQ=255)
                                                                                                    |                                                                                     
CAACGGCCATGCCGACCTGCAGCGCCAGGTCGAGCTGGGCCACCCCGCGGTCGAGGAATGGATTGCCGACTGCGTCGATGCGCTGGCGCCGGCGCTGCAGTCCGCCCTCGCCGTGCTCGACGTGCCGCTGGTGATCTTCGATGCCGATATCGACGGCGGCCTGGTCGCCACGCTGATTGCGCGCCT  >  AM260480/1682259‑1682444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.