New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1950990 =	8 (0.290)	3 (0.120)	3/196	2.3	29.5%	coding (1259/1563 nt)	pntA4	NAD(P) transhydrogenase subunit alpha
	?	AM260480	1951044 =	7 (0.280)					coding (1205/1563 nt)	pntA4	NAD(P) transhydrogenase subunit alpha

GCGATCCCGCAGCAGCAGGCGCCGGCCGCGCCGCCGCCGGTGCAGGCCGAGGCCGAGCCGCCGCGCAGCCGCACCGGCGCGACGCTGATCGCGCTGGCCATCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1951099‑1950990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcggcTCGGCCTCGGCCTGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGCGGGATCGCCACCGTCAGCGGCGGCGGTGGCCAGGTCACCGTGCCCTGGTGCAGCACCGTGGCACCGCGGATCATCTCGTCGTC  >  AM260480/1951044‑1951174                                                                                                                                                                                                                                                   gagcTCCCGCAGCAGCAGGCGCCGGCCGCGCCGCCGCCGGTGCGGGCCGAGGCCGAGCCGCCGCGGAGCCGCACCGACGCGGCGCGGATGGCGCTGGCCACCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGGC                                                                                                             <  1:573537/130‑1                                                              CGCGCAGCCGCACCGGCGCGACGCTGATCGCGCTGGCCATCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGGCGGCGCG                                                                                                       <  1:57059/79‑1                                                              CGCGCAGCCGCACCGGCGCGACGCTGATCGCGCTGGCCATCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGGCGGCGCG                                                                                                       >  2:57059/1‑79                                                                                                            GGCTCGGCCTCGGCCTGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGCGGGATCGCCACCGTCAGCGGCGGCGGTGGCCAGGTCACCGTGCCCTGGTGCAGCACCGTGGCACCGCGGATCATCTCGTCGTC  >  1:313706/1‑134                                                                                                                                                                                                                                                   GCGATCCCGCAGCAGCAGGCGCCGGCCGCGCCGCCGCCGGTGCAGGCCGAGGCCGAGCCGCCGCGCAGCCGCACCGGCGCGACGCTGATCGCGCTGGCCATCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/1951099‑1950990 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcggcTCGGCCTCGGCCTGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGCGGGATCGCCACCGTCAGCGGCGGCGGTGGCCAGGTCACCGTGCCCTGGTGCAGCACCGTGGCACCGCGGATCATCTCGTCGTC  >  AM260480/1951044‑1951174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.