New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	1950990 =	8 (0.290)	3 (0.120)	3/196	2.3	29.5%	coding (1259/1563 nt)	pntA4	NAD(P) transhydrogenase subunit alpha
	?	AM260480	1951044 =	7 (0.280)					coding (1205/1563 nt)	pntA4	NAD(P) transhydrogenase subunit alpha

TCATCAGTGGCGTATGCAGCGCGGCGGTGACGTTCCACACCACCTGGTAGCCGACAAAGATCGCCAGCACGAACACCGTGAAATGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGCGGGATCGC  >  AM260480/1950859‑1951099                                                                                                                                    |                                                                                                              gacgacgagatgatccgcggtgccacggtgctgcaccagggcacggtgacctggccaccgccgccgctgacggtggcgatcccgcagcagcaggcgccggccgcgccgccgccggtgcaggccgaggccgagcc                                                                                                             >  1:313706‑M1/132‑134 (MQ=255)        tGGCGTATGCAGCGCGGCGGTGACGTTCCACACCACCTGGTAGCCGACAAAGATCGCCAGCACGAACACCGTGAAATGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGa                                                                                                      >  2:500933/1‑134 (MQ=255)                                            cTGGTAGCCGACAAAGATCGCCAGCACGAACACCGTGAAATGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTgc                                                                  <  1:825876/134‑1 (MQ=255)                                                       cAAAGATCGCCAGCACGAACACCGTGAAATGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGCGCGGCGGctcg                                                       <  1:500933/134‑1 (MQ=255)                                                                                 aaaTGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGCGCGGCGGCTcggcctcggcct                                             >  1:380011/1‑118 (MQ=255)                                                                                 aaaTGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGCGCGGCGGCTcggcctcggcct                                             <  2:380011/118‑1 (MQ=255)                                                                                  aaTGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGGTGCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGgcggcgcg                            <  2:37259/134‑1 (MQ=255)                                                                                          aTGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTgc                                                                  >  1:942400/1‑88 (MQ=255)                                                                                          aTGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTgc                                                                  <  2:942400/88‑1 (MQ=255)                                                                                                      cgcgccgccgccggtgcaggccgaggccgaGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGcgcg                                                               <  1:57059‑M1/49‑1 (MQ=255)                                                                                                      cgcgccgccgccggtgcaggccgaggccgaGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGcgcg                                                               >  2:57059‑M1/31‑79 (MQ=255)                                                                                                            gccgccggtgcaggccgaggccgaGCCGCCGCGGTGGCCAGCGCCATCCGCGCCGCGTCGGTGCGGCTCCGCGGCGGCTCGGCCTCGGCCCGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGcgggagctc  <  1:573537‑M1/110‑5 (MQ=255)                                                                                                                                    |                                                                                                              TCATCAGTGGCGTATGCAGCGCGGCGGTGACGTTCCACACCACCTGGTAGCCGACAAAGATCGCCAGCACGAACACCGTGAAATGCGCCATGAAGGCCGGCGGCGCGACCGCGCCCAGGCCCAGCAGCGCCGCCGCCGCGATGGCCAGCGCGATCAGCGTCGCGCCGGTGCGGCTGCGCGGCGGCTCGGCCTCGGCCTGCACCGGCGGCGGCGCGGCCGGCGCCTGCTGCTGCGGGATCGC  >  AM260480/1950859‑1951099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.