New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 2412749 =18 (0.650)6 (0.240) 6/192 1.5 23.9% intergenic (+8/‑162) betA1/h16_B2132 choline dehydrogenase/conserved hypothetical protein
?AM260480 2412849 = 22 (0.890)intergenic (+108/‑62) betA1/h16_B2132 choline dehydrogenase/conserved hypothetical protein

CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2412891‑2412749
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcgcACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG  >  AM260480/2412849‑2412976
                                                                                                                                                                                                                                                                               
CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGC                                                                                                                                           >  2:147708/1‑134
                      AGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCC                                                                                                                                      <  1:881743/117‑1
                      AGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCC                                                                                                                                      >  2:881743/1‑117
                                                          CGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGC                                                                                   >  1:197711/1‑132
                                                                                   CGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGC                                                                                      >  1:186668/1‑104
                                                                                   CGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGC                                                                                      <  2:186668/104‑1
                                                                                                        GTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCC                                   >  2:71865/1‑134
                                                                                                               AGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAG                            <  2:197711/134‑1
                                                                                                                                  CCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCT         <  1:71865/134‑1
                                                                                                                                    GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGT       >  2:733989/1‑134
                                                                                                                                    GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG                                                                               <  1:288101/62‑1
                                                                                                                                    GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG                                                                               >  2:288101/1‑62
                                                                                                                                         CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG  >  2:499829/1‑134
                                                                                                                                         CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG                                                                               >  1:637910/1‑57
                                                                                                                                         CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG                                                                               <  2:637910/57‑1
                                                                                                                                                                                                                                                                               
CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2412891‑2412749
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcgcACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG  >  AM260480/2412849‑2412976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.