| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2412749 = | 18 (0.650) | 6 (0.240) | 6/192 | 1.5 | 23.9% | intergenic (+8/‑162) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein |
| ? | AM260480 | 2412849 = | 22 (0.890) | intergenic (+108/‑62) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein | |||||
CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2412891‑2412749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcgcACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG > AM260480/2412849‑2412976 CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGC > 2:147708/1‑134 AGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCC < 1:881743/117‑1 AGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCC > 2:881743/1‑117 CGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGC > 1:197711/1‑132 CGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGC > 1:186668/1‑104 CGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGC < 2:186668/104‑1 GTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCC > 2:71865/1‑134 AGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAG < 2:197711/134‑1 CCGCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCT < 1:71865/134‑1 GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGT > 2:733989/1‑134 GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG < 1:288101/62‑1 GCGCGCCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG > 2:288101/1‑62 CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG > 2:499829/1‑134 CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG > 1:637910/1‑57 CCGCGCACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGG < 2:637910/57‑1 CCGGTCTGGGTTTGTTCTGGGTAGCCGGCTTTGTGGTGTGGGTGCGCGGCGCGCCGACCGGACGCACGCTGCCCGCCGGGGACCGAAGTCCCGGCAGCACATGCGTCGGTCAGGGGTTCTGGCGGGAAGCCCGCGCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/2412891‑2412749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccgcgcACCCACACCACAAAGCCGGCTACCCAGAACAAACCCAGACCGGCTGCAAGGAGGAGACTTCCATGCTGCGCAAATACTTTGATTCAAGACGGGCCCTGCAAGGCGCCCTGCCCCTGCTGCTGTGCCAG > AM260480/2412849‑2412976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |