| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2412749 = | 18 (0.650) | 6 (0.240) | 6/192 | 1.5 | 23.9% | intergenic (+8/‑162) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein |
| ? | AM260480 | 2412849 = | 22 (0.890) | intergenic (+108/‑62) | betA1/h16_B2132 | choline dehydrogenase/conserved hypothetical protein | |||||
GCGCACCGCTGCAACGCTCGACGGCGCCTTACTACAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGCGCGCCGCGCACCCACA > AM260480/2412617‑2412855 | gcgcACCGCTGCAACGCTCGACGGCGCCTTACTACAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAggcggc > 2:728726/1‑134 (MQ=255) ctggcacagcagcaggggcagggcgccttgcagggcccgtcttgaatcaaagtatttgcgcagcatggaagtctcctccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtgcgcgg > 2:499829‑M1/129‑134 (MQ=255) acagcagcaggggcagggcgccttgcagggcccgtcttgaatcaaagtatttgcgcagcatggaagtctcctccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGgcgcgc > 2:733989‑M1/124‑134 (MQ=255) agcagcaggggcagggcgccttgcagggcccgtcttgaatcaaagtatttgcgcagcatggaagtctcctccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCgg < 1:71865‑M1/13‑1 (MQ=255) aaCGCTCGACGGCGCCTTACTACAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCggg > 2:744711/1‑134 (MQ=255) aCGGCGCCTTACTACAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGA‑‑‑‑‑‑ATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAAc > 1:825958/1‑134 (MQ=255) cttgcagggcccgtcttgaatcaaagtatttgcgcagcatggaagtctcctccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCt < 2:197711‑M1/32‑1 (MQ=255) ctacAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCt < 1:917114/133‑1 (MQ=255) ggcccgtcttgaatcaaagtatttgcgcagcatggaagtctcctccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGAc > 2:71865‑M1/96‑134 (MQ=255) gccACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGc < 1:165781/106‑1 (MQ=255) gccACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGc > 2:165781/1‑106 (MQ=255) gccACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCAt > 1:147708/1‑134 (MQ=255) gccACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCAt > 2:541588/1‑134 (MQ=255) cgcgcgcgGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGtgct > 2:106244/1‑134 (MQ=255) cgcgcgcgGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGtgct > 1:360649/1‑134 (MQ=255) gcgcgGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGcc < 1:960910/134‑1 (MQ=255) cggcggGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGcggcgcggcg > 1:540053/1‑88 (MQ=255) cggcggGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGcggcgcggcg < 2:540053/88‑1 (MQ=255) ggggCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACtt < 1:728726/134‑1 (MQ=255) ccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtgcgcgg > 1:637910‑M1/52‑57 (MQ=255) ccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtgcgcgg < 2:637910‑M1/6‑1 (MQ=255) ccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGgcgcgc > 2:288101‑M1/52‑62 (MQ=255) ccttgcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGgcgcgc < 1:288101‑M1/11‑1 (MQ=255) gcagccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCg > 1:197711‑M1/48‑132 (MQ=255) gccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCg < 2:186668‑M1/60‑1 (MQ=255) gccggtctgggtttgttctgggtagccggctttgtggtgtgggtGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCg > 1:186668‑M1/45‑104 (MQ=255) cgcgAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGcgcgccgc < 1:541588/134‑1 (MQ=255) gcgAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGcgcgccgcg < 2:360649/134‑1 (MQ=255) cgAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGcgcgccgcg > 2:1627/1‑133 (MQ=255) cgatgccgatgcCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGCGCGCCGCGCACccaca > 1:839207/1‑134 (MQ=255) | GCGCACCGCTGCAACGCTCGACGGCGCCTTACTACAAGGCCGCCACCGCGCGCGGCGGGGCGCAGGCAGACGCGGAGCGGCATCCGCCAGCCACTGCGCGAATGCCGATGCCGATGCCCGCCTGACCAGGCGGCGCGGCGCGCGGGCTTCCCGCCAGAACCCCTGACCGACGCATGTGCTGCCGGGACTTCGGTCCCCGGCGGGCAGCGTGCGTCCGGTCGGCGCGCCGCGCACCCACA > AM260480/2412617‑2412855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |