New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2485169	7 (0.250)	3 (0.120)	3/196	2.3	25.6%	coding (1897/2424 nt)	h16_B2195	signal transduction histidine kinase containing CHASE2 sensor domain
	?	AM260480	= 2485189	11 (0.440)					coding (1877/2424 nt)	h16_B2195	signal transduction histidine kinase containing CHASE2 sensor domain

GCGGGCATTGGCCAGCGCCCAGAGCTGGTCCGTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2485029‑2485169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgtgcTGGCACGCATCGCCGCCCATGCACGCCGCACGATGACGCTGGCCGACGACTTCATCAGCGTGGCGCGCGCGGAGTCGAAGACCCTGGCGTTCATGGAAGTGGAATTGGGTGGCCTGGTGCTGGATGCGAC  <  AM260480/2485189‑2485060                                                                                                                                                                                                                                                                                 GCGGGCATTGGCCAGCGCCCAGAGCTGGTCCGTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGC                                                                                                                                           >  1:18955/1‑134                                                                                GTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCTGGCACGCATCGCCGCCCATGCACGCCG                                                                                                        >  1:48232/1‑90                                                                                GTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCTGGCACGCATCGCCGCCCATGCACGCCG                                                                                                        <  2:48232/90‑1                                                                                               CGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCG                                                                                                                                       >  1:415964/1‑44                                                                                               CGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCG                                                                                                                                       <  2:415964/44‑1                                                                                                                         CAGCGTCATCGTGCGGCGTGCTGGCACGCATCGCCGCCCATGCACGCCGCACGATGACGCTGGCCGACGACTTCATCAGCGTGGCGCGCGCGGAGTCGAAGACCCTGGCGTTCATGGAAGTGGAATTGGGTGGC                   >  2:18955/1‑134                                                                                                                                          GTGCTGGCACGCATCGCCGCCCATGCACGCCGCACGATGACGCTGGCCGACGACTTCATCAGCGTGGCGCGCGCGGAGTCGAAGACCCTGGCGTTCATGGAAGTGGAATTGGGTGGCCTGGTGCTGGATGCGAC  >  2:918046/1‑134                                                                                                                                                                                                                                                                                 GCGGGCATTGGCCAGCGCCCAGAGCTGGTCCGTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2485029‑2485169 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcgtgcTGGCACGCATCGCCGCCCATGCACGCCGCACGATGACGCTGGCCGACGACTTCATCAGCGTGGCGCGCGCGGAGTCGAAGACCCTGGCGTTCATGGAAGTGGAATTGGGTGGCCTGGTGCTGGATGCGAC  <  AM260480/2485189‑2485060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.