| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | = 2485169 | 7 (0.250) | 3 (0.120) | 3/196 | 2.3 | 25.6% | coding (1897/2424 nt) | h16_B2195 | signal transduction histidine kinase containing CHASE2 sensor domain |
| ? | AM260480 | = 2485189 | 11 (0.440) | coding (1877/2424 nt) | h16_B2195 | signal transduction histidine kinase containing CHASE2 sensor domain | |||||
GTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGATCGATGCCTGCGGCGAGCGCATGTCGTGCGACAGGAAGCGCAG > AM260480/2485060‑2485316 | gTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAgcac > 2:918046‑M2/1‑130 (MQ=255) gCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAgcacgccgcacgatgacgctg > 2:18955‑M2/1‑113 (MQ=255) cGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATcgc > 1:247438/1‑134 (MQ=255) gTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATcgcgccgcgc > 1:482982/1‑134 (MQ=255) atgaAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAg < 2:823804/132‑1 (MQ=255) aaGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAg < 2:247438/134‑1 (MQ=255) gCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGATCGATGc < 2:230740/134‑1 (MQ=255) cggcgTGCATGGGCGGCGATGCGTGCCAgcacgccgcacgatgacgctggccgacgacttcatcagcgtggcgcgcgcggagtcgaagac > 1:48232‑M2/1‑28 (MQ=255) cggcgTGCATGGGCGGCGATGCGTGCCAgcacgccgcacgatgacgctggccgacgacttcatcagcgtggcgcgcgcggagtcgaagac < 2:48232‑M2/90‑63 (MQ=255) gTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTc > 1:321808/1‑94 (MQ=255) gTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTc < 2:321808/94‑1 (MQ=255) tGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGATCGATGCCTGCGGCGAGCGCATGTCGTGCGa < 1:569947/134‑1 (MQ=255) gATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGa > 1:329572/1‑95 (MQ=255) gATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGa < 2:329572/95‑1 (MQ=255) gTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGATCGATGCCTGCGGCGAGCGCATGTCGTGCGACAGGAAGCgcag > 2:705339/1‑133 (MQ=255) | GTCGCATCCAGCACCAGGCCACCCAATTCCACTTCCATGAACGCCAGGGTCTTCGACTCCGCGCGCGCCACGCTGATGAAGTCGTCGGCCAGCGTCATCGTGCGGCGTGCATGGGCGGCGATGCGTGCCAGCACGCCGCTGTCCGTGGCGACGTCGCCGGCGGCTGCCCCATCGCGCCGCGCGCGGCGCTCATGCAGCTCGATCAAGGCCAGGATCGATGCCTGCGGCGAGCGCATGTCGTGCGACAGGAAGCGCAG > AM260480/2485060‑2485316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |