New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2789937 =	14 (0.510)	3 (0.120)	3/198	2.3	20.7%	coding (147/690 nt)	h16_B2467	transcriptional regulator, ArsR‑family
	?	AM260480	2789981 =	10 (0.390)					coding (191/690 nt)	h16_B2467	transcriptional regulator, ArsR‑family

GGCTGGCTGGCCAGCGACGCCGACGCCAGCGCCTCGATCGCCACGCCGATCTCCGGCGCGGCCAGGCGGTAGTAGCGGTTGCGCCCGCGCGTCTCGGCCACCAGCAGCCCGCCTTCGGTCAAGCGGGCCAGGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2790074‑2789937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccgAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGCCAGCCAGCCGCCGCGGCTGCGC  >  AM260480/2789981‑2790087                                                                                                                                                                                                                                                       GGCTGGCTGGCCAGCGACGCCGACGCCAGCGCCTCGATCGCCACGCCGATCTCCGGCGCGGCCAGGCGGTAGTAGCGGTTGCGCCCGCGCGTCTCGGCCACCAGCAGCCCGCCTTCGGTCAAGCGGGCCAGGTG                                                                                                                 <  2:276864/134‑1                                                                                    CCCGCGCGTCTCGGCCACCAGCAGCCCGCCTTCGGTCAAGCGGGCCAGGT                                                                                                                  >  1:892658/1‑50                                                                                    CCCGCGCGTCTCGGCCACCAGCAGCCCGCCTTCGGTCAAGCGGGCCAGGT                                                                                                                  <  2:892658/50‑1                                                                                                           GCCCGCCTTCGGTCAAGCGGGCCAGGTGGCCGAGACGCGCGGGCGCAACCGCTACT                                                                                     <  1:194673/56‑1                                                                                                           GCCCGCCTTCGGTCAAGCGGGCCAGGTGGCCGAGACGCGCGGGCGCAACCGCTACT                                                                                     >  2:194673/1‑56                                                                                                                CCTTCGGTCAAGCGGGCCAGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGCCAGCCAGCCGCCGCGGCTGCGC  >  2:578691/1‑134                                                                                                                                                                                                                                                       GGCTGGCTGGCCAGCGACGCCGACGCCAGCGCCTCGATCGCCACGCCGATCTCCGGCGCGGCCAGGCGGTAGTAGCGGTTGCGCCCGCGCGTCTCGGCCACCAGCAGCCCGCCTTCGGTCAAGCGGGCCAGGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/2790074‑2789937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggccgAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGCCAGCCAGCCGCCGCGGCTGCGC  >  AM260480/2789981‑2790087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.