| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 2789937 = | 14 (0.510) | 3 (0.120) | 3/198 | 2.3 | 20.7% | coding (147/690 nt) | h16_B2467 | transcriptional regulator, ArsR‑family |
| ? | AM260480 | 2789981 = | 10 (0.390) | coding (191/690 nt) | h16_B2467 | transcriptional regulator, ArsR‑family | |||||
ATCAGCCACCTCGCCGCCCTGCTCGCCGATCCCGGCCGCGCGGCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGC > AM260480/2789809‑2790065 | aTCAGCCACCTCGCCGCCCTGCTCGCCGATCCCGGCCGCGCGGCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCa > 2:616928/1‑134 (MQ=255) aCCTCGCCGCCCTGCTCGCCGATCCCGGCCGCGCGGCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGcc > 2:925843/1‑134 (MQ=255) gcgcagccgcggcggctggctggccagcgacgccgacgccagcgcctcgatcgccacgccgatctccggcgcggccaggcggtagtagcggttgcgcccgcgcgtctCGGCCACCTGGCCCGCTTGACCGAAgg > 2:578691‑M1/108‑134 (MQ=255) gCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCg > 1:212401/1‑115 (MQ=255) gCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCg < 2:212401/115‑1 (MQ=255) tgGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCggg < 2:686563/132‑1 (MQ=255) tgGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCggg < 1:925843/132‑1 (MQ=255) tgGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCggg < 2:270040/132‑1 (MQ=255) ggACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGctac > 2:957332/1‑133 (MQ=255) cggcccgCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGgc > 2:158827/1‑85 (MQ=255) cggcccgCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGgc < 1:158827/85‑1 (MQ=255) gcgcTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTg < 1:957332/132‑1 (MQ=255) agtagcggttgcgcccgcgcgtctCGGCCACCTGGCCCGCTTGACCGAAGGCGGgc > 2:194673‑M1/25‑56 (MQ=255) agtagcggttgcgcccgcgcgtctCGGCCACCTGGCCCGCTTGACCGAAGGCGGgc < 1:194673‑M1/32‑1 (MQ=255) tCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTggcgtc > 2:352481/1‑134 (MQ=255) tCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTggcgtc > 1:752259/1‑134 (MQ=255) caGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGgc > 2:448250/1‑132 (MQ=255) | ATCAGCCACCTCGCCGCCCTGCTCGCCGATCCCGGCCGCGCGGCCATGCTGTGGGCGCTGATGGACGGCAGCGCCCGGCCCGCCGGCGAGCTGGCGCTGATCGCCGGGCTGTCGGCCTCCTCCACCAGCGGCCACCTGGCCCGCTTGACCGAAGGCGGGCTGCTGGTGGCCGAGACGCGCGGGCGCAACCGCTACTACCGCCTGGCCGCGCCGGAGATCGGCGTGGCGATCGAGGCGCTGGCGTCGGCGTCGCTGGC > AM260480/2789809‑2790065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |