New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 150241	13 (0.500)	4 (0.170)	4/200	1.9	23.4%	coding (706/843 nt)	h16_A0136	transcriptional regulator, BAF‑family
	?	AM260479	= 150273	14 (0.580)					coding (738/843 nt)	h16_A0136	transcriptional regulator, BAF‑family

GACGATGCCGGCACCGTGGCCGGCGCGCACCTGCGCTGGGCCGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACGCGATGGCGATGGCATCGGC  >  AM260479/150109‑150368                                                                                                                                     |                                                                                                                                gacgATGCCGGCACCGTGGCCGGCGCGCACCTGCGCTGGGCCGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGcgggcc                                                                                                                                <  1:666706/134‑1 (MQ=255)                          cgcACCTGCGCTGGGCCGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTcc                                                                                                       >  1:964825/1‑134 (MQ=255)                            cACCTGCGCTGGGCCGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCCAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCcgg                                                                                                     >  1:971321/1‑134 (MQ=255)                                         ccGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTgcccgcgct                                                                                        >  2:404785‑M2/1‑125 (MQ=255)                                                    cACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTgcccgcgctcgcccagcaca                                                                             >  2:971321‑M2/1‑114 (MQ=255)                                                           ccATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTc                                                                      >  2:476651/1‑134 (MQ=255)                                                                          gCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTc                                                          >  1:204749/1‑131 (MQ=255)                                                                               gCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCaccgccggacagcaggcagcgcacggggcccggcccgcgctcgc                                                                                     <  1:563077‑M1/99‑45 (MQ=255)                                                                               gCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCaccgccggacagcaggcagcgcacggggcccggcccgcgctcgc                                                                                     >  2:563077‑M1/1‑55 (MQ=255)                                                                                       ggCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATc                                          <  2:204749/134‑1 (MQ=255)                                                                                       ggCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATc                                          >  2:581517/1‑134 (MQ=255)                                                                                                  tCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCgaga                                                      <  2:151819/111‑1 (MQ=255)                                                                                                  tCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCgaga                                                      >  1:151819/1‑111 (MQ=255)                                                                                                                  tgtgCTGGGCGAGCGCGGGCaccgccggacagcaggcagcgcacggggcccggcccgcgctcgcccagcacacgccaggtgcgttcgatggcgccggcctgcgcggccaggcagcccgcggcaatggcgtcgtg               >  2:971321‑M1/1‑20 (MQ=255)                                                                                                                   gtgCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACgcgatggc              >  1:958927/1‑134 (MQ=255)                                                                                                                        gggCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACGcgatggcgatgg         >  1:54828/1‑134 (MQ=255)                                                                                                                          gCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTgcccgcgctcgcccagcacacgccaggtgcgttcgatggcgccggcctgcgcggc                                          <  1:563077‑M2/99‑56 (MQ=255)                                                                                                                          gCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTgcccgcgctcgcccagcacacgccaggtgcgttcgatggcgccggcctgcgcggc                                          >  2:563077‑M2/1‑44 (MQ=255)                                                                                                                          gCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACGCGATGGCGATGGCa       <  2:964825/134‑1 (MQ=255)                                                                                                                             aGCGCGGGCaccgccggacagcaggcagcgcacggggcccggcccgcgctcgcccagcacacgccaggtgcgttcgatggcgccggcctgcgcggccaggcagcccgcggcaatggcgtcgtgcgtattgtcgg    >  2:404785‑M1/1‑9 (MQ=255)                                                                                                                               cgcgGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACGCGATGGCGATGGCATcggc  <  1:903486/134‑1 (MQ=255)                                                                                                                                     |                                                                                                                                GACGATGCCGGCACCGTGGCCGGCGCGCACCTGCGCTGGGCCGACAATACGCACGACGCCATTGCCGCGGGCTGCCTGGCCGCGCAGGCCGGCGCCATCGAACGCACCTGGCGTGTGCTGGGCGAGCGCGGGCCGGGCCCCGTGCGCTGCCTGCTGTCCGGCGGTGCCCGCGGCGCGCTGGCAGGCGCGCTCGCCGTGCCGTTCGAGATGCACGATAATCTGGTGCTGCTCGGCCTGCACGCGATGGCGATGGCATCGGC  >  AM260479/150109‑150368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.