New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	254557 =	22 (0.850)	5 (0.220)	5/192	1.6	20.5%	coding (228/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism
	?	AM260479	254640 =	19 (0.820)					coding (311/453 nt)	h16_A0241	Uncharacterized protein, possibly involved in aromatic compounds catabolism

CGGAGCTTATCGAGGAGGGCTATTGCCGCACGCGGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTC  >  AM260479/254436‑254689                                                                                                                          |                                                                                                                                     cGGAGCTTATCGAGGAGGGCTATTGCCGCACGCGGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCg                                                                                                                          >  1:1023826/1‑134 (MQ=255)                          ccGCACGCGGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTg                                                                                                  <  2:1023826/133‑1 (MQ=255)                          ccGCACGCGGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGa                                                                                                 >  1:157384/1‑134 (MQ=255)                                gcgGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGa                                                                                           >  2:353124/1‑134 (MQ=255)                                 cgGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTgg                                                                                                             >  2:458945/1‑115 (MQ=255)                                 cgGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTgg                                                                                                             <  1:458945/115‑1 (MQ=255)                                  ggCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGgcgc                                                                                                                                    >  2:80709/1‑91 (MQ=255)                                  ggCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGgcgc                                                                                                                                    <  1:80709/91‑1 (MQ=255)                                  ggCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTgg                                                                                                             >  2:500747/1‑114 (MQ=255)                                  ggCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTgg                                                                                                             <  1:500747/114‑1 (MQ=255)                                           ccggcagcatccttgacctcgccctcgcagaatgcaatgcgcgcgccgcggcgcaggcagcgcgcctccagcgtcagctCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTc                                                                                 <  2:233142‑M1/54‑1 (MQ=255)                                                               aGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAgc                                                            <  2:157384/134‑1 (MQ=255)                                                                  ctcgcagaatgcaatgcgcgcgccgcggcgcaggcagcgcgcctccagcgtcagctCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAgcgcg                                                         >  1:233142‑M1/57‑134 (MQ=255)                                                                                   gcgcgccgcggcgcaggcagcgcgcctccagcgtcagctCGCCGCGCGCTCg                                                                                                                          <  1:575200‑M1/13‑1 (MQ=255)                                                                                   gcgcgccgcggcgcaggcagcgcgcctccagcgtcagctCGCCGCGCGCTCg                                                                                                                          >  2:575200‑M1/40‑52 (MQ=255)                                                                                       aCGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGAt                                                                                                >  1:79414/1‑74 (MQ=255)                                                                                       aCGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGAt                                                                                                <  2:79414/74‑1 (MQ=255)                                                                                            gATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGct                               >  1:636177/1‑134 (MQ=255)                                                                                                 cGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGctgcctg                          >  2:846945/1‑134 (MQ=255)                                                                                                         gACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGAt                                                                                                >  1:357749/1‑56 (MQ=255)                                                                                                         gACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGAt                                                                                                <  2:357749/56‑1 (MQ=255)                                                                                                              cACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGgcgcgc             >  1:331221/1‑134 (MQ=255)                                                                                                                  cTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcat         <  2:331221/134‑1 (MQ=255)                                                                                                                  cTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcat         <  1:353124/134‑1 (MQ=255)                                                                                                                     aGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcattg       >  2:554112/1‑133 (MQ=255)                                                                                                                        ctCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCgcattgcatt   <  2:891717‑M1/132‑1 (MQ=255)                                                                                                                         gcgcCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTc  >  2:9545/1‑134 (MQ=255)                                                                                                                          |                                                                                                                                     CGGAGCTTATCGAGGAGGGCTATTGCCGCACGCGGCTGCCGGCGCACCCGTCGCTGGTCAACAGCCGCGGCGATGTGCATGGCGGCACGCTGATGGCGACGCTGGACTTCACCCTGAGCGGCGCCGCGCGCTCGCATGCGCCGCTGGAAACCGGCGTGATCACGATCGACATGTCCACGCATTTCCTGGCGGCAGCGCGCGGCGAGCTGACGCTGGAGGCGCGCTGCCTGCGCCGCGGCGCGCGCATTGCATTC  >  AM260479/254436‑254689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.