New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 2905804 =12 (0.470)5 (0.220) 5/192 1.6 21.4% intergenic (‑206/+113) h16_A2690/h16_A2691 Hypothetical protein/hypothetical membrane associated protein
?AM260479 2905899 = 26 (1.120)intergenic (‑301/+18) h16_A2690/h16_A2691 Hypothetical protein/hypothetical membrane associated protein

CAATCGCAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCA  >  AM260479/2905674‑2905919
                                                                                                                                  |                                                                                                                   
gatcgagctgccgcccggcaagcatacgctgcagctgctgatgggggatgacaagcacattcccaccaacccgccggtttattcgaagaggatcacgatctacgtgaagtgatccggaccttgcggtgacggcg                                                                                                                  <  2:165645‑M1/4‑1 (MQ=255)
      cAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACCGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGgcgcg                                                                                                             >  2:466659/1‑132 (MQ=255)
        gggAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAg                                                                                                          >  1:1015123/1‑134 (MQ=255)
                    gCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:1015123/134‑1 (MQ=255)
                    gCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:442224/134‑1 (MQ=255)
                         ggCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTc                                                                                         >  1:394340/1‑134 (MQ=255)
                                        cgGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              >  1:741553/1‑114 (MQ=255)
                                        cgGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:741553/114‑1 (MQ=255)
                                                                accaacccgccggtttattcgaagaggatcacgatctacgtgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGca                                                   <  2:168807‑M1/67‑1 (MQ=255)
                                                                      aaTTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACaaaaa                                             >  2:390720/1‑133 (MQ=255)
                                                                       aTTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACaaaaaa                                            >  2:924180/1‑133 (MQ=255)
                                                                                          gatcacgatctacgtgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGcgccgc                        >  1:168807‑M1/41‑134 (MQ=255)
                                                                                                        tgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTgcgcg                            >  1:119309‑M1/27‑116 (MQ=255)
                                                                                                        tgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTgcgcg                            <  2:119309‑M1/90‑1 (MQ=255)
                                                                                                          ggcgAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCg       <  2:394340/134‑1 (MQ=255)
                                                                                                             gAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGa     <  2:941349/134‑1 (MQ=255)
                                                                                                               gCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATc   <  1:924180/134‑1 (MQ=255)
                                                                                                                tccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCa  <  1:863507‑M1/116‑1 (MQ=255)
                                                                                                                                  |                                                                                                                   
CAATCGCAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCA  >  AM260479/2905674‑2905919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.