New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2905804 =	12 (0.470)	5 (0.220)	5/192	1.6	21.4%	intergenic (‑206/+113)	h16_A2690/h16_A2691	Hypothetical protein/hypothetical membrane associated protein
	?	AM260479	2905899 =	26 (1.120)					intergenic (‑301/+18)	h16_A2690/h16_A2691	Hypothetical protein/hypothetical membrane associated protein

CAATCGCAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCA  >  AM260479/2905674‑2905919                                                                                                                                   |                                                                                                                    gatcgagctgccgcccggcaagcatacgctgcagctgctgatgggggatgacaagcacattcccaccaacccgccggtttattcgaagaggatcacgatctacgtgaagtgatccggaccttgcggtgacggcg                                                                                                                  <  2:165645‑M1/4‑1 (MQ=255)       cAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAAC‑CGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGgcgcg                                                                                                             >  2:466659/1‑132 (MQ=255)         gggAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAg                                                                                                          >  1:1015123/1‑134 (MQ=255)                     gCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:1015123/134‑1 (MQ=255)                     gCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:442224/134‑1 (MQ=255)                          ggCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTc                                                                                         >  1:394340/1‑134 (MQ=255)                                         cgGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              >  1:741553/1‑114 (MQ=255)                                         cgGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGc                                                                                              <  2:741553/114‑1 (MQ=255)                                                                 accaacccgccggtttattcgaagaggatcacgatctacgtgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGca                                                   <  2:168807‑M1/67‑1 (MQ=255)                                                                       aaTTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACaaaaa                                             >  2:390720/1‑133 (MQ=255)                                                                        aTTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACaaaaaa                                            >  2:924180/1‑133 (MQ=255)                                                                                           gatcacgatctacgtgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGcgccgc                        >  1:168807‑M1/41‑134 (MQ=255)                                                                                                         tgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTgcgcg                            >  1:119309‑M1/27‑116 (MQ=255)                                                                                                         tgaagtgatccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTgcgcg                            <  2:119309‑M1/90‑1 (MQ=255)                                                                                                           ggcgAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCAC‑AAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCg       <  2:394340/134‑1 (MQ=255)                                                                                                              gAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGa     <  2:941349/134‑1 (MQ=255)                                                                                                                gCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATc   <  1:924180/134‑1 (MQ=255)                                                                                                                 tccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCa  <  1:863507‑M1/116‑1 (MQ=255)                                                                                                                                   |                                                                                                                    CAATCGCAGGGAGCGTGCCAGCCCCGGCGCCATGGCCGCGCGGATCACGGAAGTGCCTGTAAACACGGGGAATTTTTCTTGCCGCCAGCGCCGGCGGCGGAGGCGCGGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCA  >  AM260479/2905674‑2905919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.