New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2905804 =	12 (0.470)	5 (0.220)	5/192	1.6	21.4%	intergenic (‑206/+113)	h16_A2690/h16_A2691	Hypothetical protein/hypothetical membrane associated protein
	?	AM260479	2905899 =	26 (1.120)					intergenic (‑301/+18)	h16_A2690/h16_A2691	Hypothetical protein/hypothetical membrane associated protein

GGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCATCAGCAGCTGCAGCGTATGCTTGCCGGGCGGCAGCTCGATC  >  AM260479/2905780‑2906028                                                                                                                        |                                                                                                                                  ggcgAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCAC‑AAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCg                                                                                                                    <  2:394340/134‑1 (MQ=255)    tgatccggaccttgcggtgacggcggcgcgcaatgcgccgttttttttgtgcgctggcgccgcaagtgtcggtcgccatccaacatcgacgggcaagctgttggctgcgcgccgccGTCACCGCAAGGTCCGGa                                                                                                                  <  1:863507‑M2/18‑1 (MQ=255)    gAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGa                                                                                                                  <  2:941349/134‑1 (MQ=255)      gCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATc                                                                                                                <  1:924180/134‑1 (MQ=255)       tccggaccttgcggtgacGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCa                                                                                                               <  1:863507‑M1/116‑1 (MQ=255)                          gcggcgcgcaatgcgccgttttttttgtgcgctggcgccgcaagtgtcggtcgccatccaacatcgacgggcaagctgttggctgcgcgccgccGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATc                                                                                            >  1:168807‑M2/95‑134 (MQ=255)                              cgcgcaatgcgccgttttttttgtgcgctggcgccgcaagtgtcggtcgccatccaacatcgacgggcaagctgttggctgcgcgccgccGTCACCGCAAGGTCCGGATCACTTCa                                                                                                          <  2:119309‑M2/26‑1 (MQ=255)                              cgcgcaatgcgccgttttttttgtgcgctggcgccgcaagtgtcggtcgccatccaacatcgacgggcaagctgttggctgcgcgccgccGTCACCGCAAGGTCCGGATCACTTCa                                                                                                          >  1:119309‑M2/91‑116 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCAc                                                                                                                               <  1:295994/89‑1 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCAc                                                                                                                               >  2:295994/1‑89 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTc                                                                                                                      >  1:101692/1‑98 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTc                                                                                                                      <  2:101692/98‑1 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACtt                                                                                                            >  1:723680/1‑108 (MQ=255)                                    gCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACtt                                                                                                            <  2:723680/108‑1 (MQ=255)                                           gCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACcgg                                                                           <  2:202581/134‑1 (MQ=255)                                                   gTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACcggc                                                                          <  1:616620/127‑1 (MQ=255)                                                   gTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACcggc                                                                          >  2:616620/1‑127 (MQ=255)                                                    tCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTtggt                                                                  <  1:39414/134‑1 (MQ=255)                                                     tgcgctggcgccgcaagtgtcggtcgccatccaacatcgacgggcaagctgttggctgcgcgccgccGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTtggt                                                                  <  2:168807‑M2/66‑1 (MQ=255)                                                              aTGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGc                                                        <  1:390720/134‑1 (MQ=255)                                                                 gCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAAc                                                                              <  1:368222/109‑1 (MQ=255)                                                                 gCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAAc                                                                              >  2:368222/1‑109 (MQ=255)                                                                 gCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTg                                                     <  2:863507/134‑1 (MQ=255)                                                                   gaccgacACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGaa                                                             >  1:306022/1‑124 (MQ=255)                                                                   gaccgacACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGaa                                                             <  2:306022/124‑1 (MQ=255)                                                                        acacTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTc                                                                                                           <  1:798254/73‑1 (MQ=255)                                                                        acacTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTc                                                                                                           >  2:798254/1‑73 (MQ=255)                                                                           cTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACcggc                                                                          <  2:463373/103‑1 (MQ=255)                                                                           cTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACcggc                                                                          >  1:463373/1‑103 (MQ=255)                                                                           cTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCa                                           >  1:165645/1‑134 (MQ=255)                                                                            ttGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCAt                                          >  2:366387/1‑134 (MQ=255)                                                                                 gcgcCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCATcagca                                     <  1:466659/134‑1 (MQ=255)                                                                                                                    cgccGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCATCAGCAGCTGCAGCGTATGCTTGCCGGGCGGCAGCTCGATc  <  2:165645‑M2/130‑1 (MQ=255)                                                                                                                        |                                                                                                                                  GGCGAGCCTGCGTCAGCGCGCACTGGCGGCGCGCAGCCAACAGCTTGCCCGTCGATGTTGGATGGCGACCGACACTTGCGGCGCCAGCGCACAAAAAAAACGGCGCATTGCGCGCCGCCGTCACCGCAAGGTCCGGATCACTTCACGTAGATCGTGATCCTCTTCGAATAAACCGGCGGGTTGGTGGGAATGTGCTTGTCATCCCCCATCAGCAGCTGCAGCGTATGCTTGCCGGGCGGCAGCTCGATC  >  AM260479/2905780‑2906028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.