New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3082658	10 (0.390)	3 (0.130)	3/196	2.1	21.3%	coding (560/1059 nt)	h16_A2858	hypothetical membrane associated protein
	?	AM260479	= 3082712	13 (0.550)					coding (506/1059 nt)	h16_A2858	hypothetical membrane associated protein

TCGGCGTACGGGTTGAAGCTGGACTCGATCGCGATCACGCCCAGGATCAGCAGCGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCT  >  AM260479/3082532‑3082790                                                                                                                               |                                                                                                                                     tCGGCGTACGGGTTGAAGCTGGACTCGATCGCGATCACGCCCAGGATCAGCAGCGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTAc                                                                                                                                 <  2:647720/132‑1 (MQ=255)  cGGCGTACGGGTTGAAGCTGGACTCGATCGCGATCACGCCCAGGATCAGCAGCGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTg                                                                                                                              >  1:293187/1‑134 (MQ=255)                          cGATCGCGATCACGCCCAGGATCAGCAGCGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCtgggcagcgcgcgcgagcaggcggccgtcgcc                                                                                                      >  2:755999‑M1/1‑102 (MQ=255)                                                 agcagcGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTAc                                                                                                                                 >  2:163726/1‑84 (MQ=255)                                                 agcagcGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTAc                                                                                                                                 <  1:163726/84‑1 (MQ=255)                                                  gcagcGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgc                                                                              <  1:755999‑M1/134‑57 (MQ=255)                                                       gggTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggc                                                                         <  1:638996‑M2/134‑8 (MQ=255)                                                           cGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGtg                                                                     >  1:69393/1‑134 (MQ=255)                                                            gATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTg                                                                                                                              <  1:43158/76‑1 (MQ=255)                                                            gATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTg                                                                                                                              >  2:43158/1‑76 (MQ=255)                                                            gATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggcggcgc                                                                    >  2:992204‑M2/1‑122 (MQ=255)                                                                                tCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCAcg                                                <  1:438997/134‑1 (MQ=255)                                                                                            ccTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCgg                                     >  1:797105/1‑133 (MQ=255)                                                                                            ccTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCgg                                     >  1:981535/1‑133 (MQ=255)                                                                                              ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgt                                                                            >  1:952135‑M2/1‑88 (MQ=255)                                                                                              ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgt                                                                            <  2:952135‑M2/92‑5 (MQ=255)                                                                                              ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgc                                                                              <  2:231066‑M2/90‑3 (MQ=255)                                                                                              ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgc                                                                              >  1:231066‑M2/1‑88 (MQ=255)                                                                                                                    gcgcCGCCACGCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaaggcggcctacctgaccggccgcgaggtcggcatc            >  2:992204‑M1/1‑12 (MQ=255)                                                                                                                         gccACGCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaaggcggcctacctgaccggccgcgaggtcggcatcgaccc       <  1:638996‑M1/134‑128 (MQ=255)                                                                                                                            aCGCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaa                                              >  1:952135‑M1/1‑4 (MQ=255)                                                                                                                            aCGCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaa                                              <  2:952135‑M1/92‑89 (MQ=255)                                                                                                                              gcgGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggcggcgcaggccaccgcgcagctggtgaaggcggcctacctgaccggccgcgaggtcggcatcgacccgctgc  <  1:755999‑M2/134‑79 (MQ=255)                                                                                                                              gCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaa                                              <  2:231066‑M1/90‑89 (MQ=255)                                                                                                                              gCtgggcagcgcgcgcgagcaggcggccgtcgccgactatatcgcccgcaagtaccgcgtggcggcgcaggccaccgcgcagctggtgaa                                              >  1:231066‑M1/1‑2 (MQ=255)                                                                                                                               |                                                                                                                                     TCGGCGTACGGGTTGAAGCTGGACTCGATCGCGATCACGCCCAGGATCAGCAGCGGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCT  >  AM260479/3082532‑3082790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.