New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3082658	10 (0.390)	3 (0.130)	3/196	2.1	21.3%	coding (560/1059 nt)	h16_A2858	hypothetical membrane associated protein
	?	AM260479	= 3082712	13 (0.550)					coding (506/1059 nt)	h16_A2858	hypothetical membrane associated protein

GGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATGCCGCCAGGGTCCATTCGTCCACGCCCGACACCGTCGGC  >  AM260479/3082586‑3082837                                                                                                                               |                                                                                                                              gggTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggc                                                                                                                        <  1:638996‑M2/134‑8 (MQ=255)     cGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGtg                                                                                                                    >  1:69393/1‑134 (MQ=255)      gATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggcggcgc                                                                                                                   >  2:992204‑M2/1‑122 (MQ=255)                          tCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCAcg                                                                                               <  1:438997/134‑1 (MQ=255)                                      ccTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCgg                                                                                    >  1:981535/1‑133 (MQ=255)                                      ccTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCgg                                                                                    >  1:797105/1‑133 (MQ=255)                                        ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgt                                                                                                                           >  1:952135‑M2/1‑88 (MQ=255)                                        ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgt                                                                                                                           <  2:952135‑M2/92‑5 (MQ=255)                                        ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgc                                                                                                                             >  1:231066‑M2/1‑88 (MQ=255)                                        ttCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgc                                                                                                                             <  2:231066‑M2/90‑3 (MQ=255)                                                                        gcgGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggcggcgcaggccaccgcgcagctggtgaaggcggcctacctgaccggccgcgaggtcggcatcgacccgctgc                                                 <  1:755999‑M2/134‑79 (MQ=255)                                                                              cTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCg                                            <  2:638996/133‑1 (MQ=255)                                                                                  cGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATgc                                       <  2:293187/134‑1 (MQ=255)                                                                                          ataGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCcgcgc                                                                           <  2:481054/90‑1 (MQ=255)                                                                                          ataGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCcgcgc                                                                           >  1:481054/1‑90 (MQ=255)                                                                                          ataGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATGCCGCCAggg                               >  2:932791/1‑134 (MQ=255)                                                                                                ggCGACGGCCGCCTGCTCGCGCGCGCTGCCCAgcgtggcggcgcaggccaccgcgcagctggtgaaggcggcctacctgaccggccgcgaggtcggcatcgacccgctgctgatcctgggcgtgatcgcgatcg                         >  2:755999‑M2/1‑32 (MQ=255)                                                                                                    aCGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATGCCGCCAGGGTCCATTCGTc                     <  1:567719/134‑1 (MQ=255)                                                                                                                   cgcgcgcTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATgccgc                                    <  2:346870/104‑1 (MQ=255)                                                                                                                   cgcgcgcTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATgccgc                                    >  1:346870/1‑104 (MQ=255)                                                                                                                       cgcTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATGCCGCCAGGGTCCATTCGTCCACGCCCGACACCGTCGGc  <  1:932791/134‑1 (MQ=255)                                                                                                                               |                                                                                                                              GGGTCGATGCCGACCTCGCGGCCGGTCAGGTAGGCCGCCTTCACCAGCTGCGCGGTGGCCTGCGCCGCCACGCGGTACTTGCGGGCGATATAGTCGGCGACGGCCGCCTGCTCGCGCGCGCTGCCCAGCGTGGCGGTGCTGCGGGCGTCTTGCGCCACGCGCGTGACCGGGATCCGCGCGGCGAGGTGCGCGACCGACGGCACCTTGGCGGATGCCGCCAGGGTCCATTCGTCCACGCCCGACACCGTCGGC  >  AM260479/3082586‑3082837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.