| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 36 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1 = | 0 (0.000) | 21 (1.210) | 15/136 | 0.2 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
| ? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTTC > AM260480/1‑134 | caggcgctccgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCAc < 2:142418‑M1/16‑1 (MQ=255) cgctccagcccccgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAg > 2:665399‑M1/109‑132 (MQ=255) cgcatgcccatgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAg < 1:607358‑M1/38‑1 (MQ=255) tgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGa < 2:683850‑M1/47‑1 (MQ=255) tgccgccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGa < 2:578616‑M1/47‑1 (MQ=255) gccgccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATgg < 1:1017396‑M1/52‑1 (MQ=255) gccagccggcacgcctggccttgcgcggcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:142418‑M1/80‑134 (MQ=255) gcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACg < 2:756002‑M1/17‑1 (MQ=255) gcgcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACg > 1:756002‑M1/53‑69 (MQ=255) gcactttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCt > 2:1017396‑M1/51‑134 (MQ=255) ctttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa > 1:42783‑M1/48‑70 (MQ=255) ctttcccgctcaccatccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa < 2:42783‑M1/23‑1 (MQ=255) tccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCa < 1:839761‑M1/100‑1 (MQ=255) tccagccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCa > 2:839761‑M1/33‑132 (MQ=255) agccttgcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAAc > 2:607358‑M1/30‑134 (MQ=255) gcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAgg > 1:68262‑M1/24‑48 (MQ=255) gcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAgg < 2:68262‑M1/25‑1 (MQ=255) gcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 1:901275‑M1/24‑78 (MQ=255) gcgctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 2:901275‑M1/55‑1 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa > 2:936548‑M1/21‑43 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCa < 1:936548‑M1/23‑1 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAg > 1:340213‑M1/21‑44 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAg < 2:340213‑M1/24‑1 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGcc < 1:906904‑M1/114‑1 (MQ=255) ctccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGcc < 2:902654‑M1/114‑1 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGt < 2:1001962‑M1/21‑1 (MQ=255) ccacgcagaatcgggtacGCCTGCTGCACCGCACGAGGt > 1:1001962‑M1/19‑39 (MQ=255) cacgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGccc > 2:906904‑M1/18‑132 (MQ=255) acgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCggg < 1:913371‑M1/94‑1 (MQ=255) acgcagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCggg > 2:913371‑M1/17‑110 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGc < 2:112393‑M1/73‑1 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGc > 1:112393‑M1/14‑86 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCggg > 1:113644‑M1/14‑107 (MQ=255) cagaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCggg < 2:113644‑M1/94‑1 (MQ=255) agaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa < 1:1018318‑M1/55‑1 (MQ=255) agaatcgggtacGCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTa > 2:1018318‑M1/13‑67 (MQ=255) GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTTc < 1:246441‑M1/134‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGCCTCGCAGAAATGGGTACGGTCTGTCCTGGCAGGCCTGCTTGCGCTGGGCAGCGGGTACGCAGAAACAGGTACGCCCTGCGGCACTTTGGTCTTTC > AM260480/1‑134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |