Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | AM260480 | 2912452 | 2912490 | 39 | 36 [0] | [0] NA | h16_B2579/– | cold shock protein, DNA‑binding/– |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260480 | 1 = | 0 (0.000) | 21 (1.210) | 15/136 | 0.2 | 100% | intergenic (–/‑1344) | –/pA2 | –/replication initiation protein RepA |
? | AM260480 | = 2912451 | 0 (0.000) | intergenic (+242/–) | h16_B2579/– | cold shock protein, DNA‑binding/– |
CAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912335‑2912490 | cAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcac < 2:142418‑M2/133‑17 (MQ=255) cgctccAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcag > 2:665399‑M2/1‑108 (MQ=255) cGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgag < 1:607358‑M2/134‑39 (MQ=255) tgccGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcaga < 2:578616‑M2/133‑48 (MQ=255) tgccGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcaga < 2:683850‑M2/133‑48 (MQ=255) gccgccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgg < 1:1017396‑M2/134‑53 (MQ=255) gccAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:142418‑M2/1‑79 (MQ=255) gcgcACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacg < 2:756002‑M2/69‑18 (MQ=255) gcgcACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacg > 1:756002‑M2/1‑52 (MQ=255) gcACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgct > 2:1017396‑M2/1‑50 (MQ=255) cTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca < 2:42783‑M2/70‑24 (MQ=255) cTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca > 1:42783‑M2/1‑47 (MQ=255) tCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgca < 1:839761‑M2/132‑101 (MQ=255) tCCAGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgca > 2:839761‑M2/1‑32 (MQ=255) aGCCTTGCGCTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaac > 2:607358‑M2/1‑29 (MQ=255) gcgcTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 1:901275‑M2/1‑23 (MQ=255) gcgcTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 2:901275‑M2/78‑56 (MQ=255) gcgcTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcagg > 1:68262‑M2/1‑23 (MQ=255) gcgcTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcagg < 2:68262‑M2/48‑26 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgcc < 1:906904‑M2/134‑115 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgcc < 2:902654‑M2/134‑115 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcag > 1:340213‑M2/1‑20 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcag < 2:340213‑M2/44‑25 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca > 2:936548‑M2/1‑20 (MQ=255) cTCCACGCAGAATCGGGTACgcctgctgcaccgcacgaggtca < 1:936548‑M2/43‑24 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggt < 2:1001962‑M2/39‑22 (MQ=255) ccACGCAGAATCGGGTACgcctgctgcaccgcacgaggt > 1:1001962‑M2/1‑18 (MQ=255) cACGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcgggtacgcagaaacaggtacgccc > 2:906904‑M2/1‑17 (MQ=255) aCGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggg < 1:913371‑M2/110‑95 (MQ=255) aCGCAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggg > 2:913371‑M2/1‑16 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggg < 2:113644‑M2/107‑95 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggcctgcttgcgctgggcagcggg > 1:113644‑M2/1‑13 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggc < 2:112393‑M2/86‑74 (MQ=255) cAGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggtacggtctgtcctggcaggc > 1:112393‑M2/1‑13 (MQ=255) aGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta > 2:1018318‑M2/1‑12 (MQ=255) aGAATCGGGTACgcctgctgcaccgcacgaggtcaggcacggcccgtgagcctcgcagaaatgggta < 1:1018318‑M2/67‑56 (MQ=255) | CAGGCGCTCCGCTCCAGCCCCCGCATGCCCATGCCGCCGCCAGCCGGCACGCCTGGCCTTGCGCGGCGCACTTTCCCGCTCACCATCCAGCCTTGCGCTCCACGCAGAATCGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGCTGCACCGCACGAGGTCAGGCACGGCCCGTGAGC > AM260480/2912335‑2912490 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |