New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_12 = 5927641 (0.100)251 (0.650) 66/254 2.0 92.5% coding (62/672 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog
?AssemblyC74_contig_18 = 27075 0 (0.000)intergenic (+1/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–

Only 100 of 298 total aligned reads displayed.

TCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_12/59142‑59337
                                                                                                                                      |                                                                                                                                     
tCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTa                                                                                                                                       >  1:1185904/1‑135 (MQ=17)
  tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaa                                                                                                                                     <  2:757316‑M1/135‑3 (MQ=255)
  tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                                                      >  2:909369‑M1/1‑133 (MQ=255)
  tGACTTCTTTCGATCTCAAACTCGATTGGAGTCGCATCTACTTCATACCCGAATGGCGCTTGAGTATCTACAAGCTGATATGCTCCTCGTGCTAAACCGTCAATTGCCAGTTTTACATCGTCTCCTGTAGTTac                                                                                                                                      >  1:581967/1‑133 (MQ=255)
    aCTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaacc                                                                                                                                   <  1:2468392‑M1/135‑5 (MQ=255)
    aCTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAcc                                                                                                                                   >  1:2423477/1‑135 (MQ=14)
     cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                                                  >  1:935318/1‑134 (MQ=14)
      ttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                                                  <  1:1913606/134‑2 (MQ=14)
       tcttTCGATCTCACACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                                                <  2:2575254/135‑4 (MQ=14)
       tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggt                                                                                                                                <  1:1045980‑M1/135‑8 (MQ=255)
       tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggt                                                                                                                                <  1:1856866‑M1/135‑8 (MQ=255)
       tcttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                                                <  1:2676045/135‑4 (MQ=14)
        cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                               <  1:1123061/135‑5 (MQ=14)
        cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                               >  2:2219736/1‑131 (MQ=14)
        cttTCGATCTCAAACTCGATTGGTGTCGAATCTAATTCATAACCTATTGGCGCTTGAGTTTCTACCAGCTGATATGATCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTCGTTAGAccgggt                                                                                                                               >  1:235227/1‑131 (MQ=14)
        cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                                               <  2:461246/135‑5 (MQ=14)
          ttCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtttg                                                                                                                             <  1:2728158/135‑7 (MQ=14)
                                             cATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                                          <  1:3017607‑M1/135‑46 (MQ=255)
                                               ttcgccGTTGGCTCTTGGGTTTCTTCCAGCTGATAGACTCCTGGTGCTTAGCAGTCTATAGCTAGTTTTCCATCTGCTACTGTGGTTAGACCTGACTGCAGAACGGTTCCTTTTGCATCTTGTTACTCAAAAACa                                                                                        <  2:2943032/131‑1 (MQ=11)
                                                           gcTTGTGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaag                                                                             <  2:2354656‑M1/134‑59 (MQ=255)
                                                                 gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                                       >  1:2934150‑M1/1‑70 (MQ=255)
                                                                 gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                                       >  1:1493526‑M1/1‑70 (MQ=255)
                                                                 gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                                       >  1:1965278‑M1/1‑70 (MQ=255)
                                                                 gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                                                       >  2:2300441‑M1/1‑70 (MQ=255)
                                                                 gTTTCTACCAGCTGAAACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTACATCATCTCCAGAGGATAAACAAGACTGCAGAACGGTTCAATTGGCGTCTGGAAACTCAAAAACAGCGCCTTGCAGGActtc                                                                       >  2:2235564/1‑131 (MQ=255)
                                                                  tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                                                      <  2:1899024‑M1/134‑66 (MQ=255)
                                                                        ccAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                                                 >  2:2445660‑M1/1‑63 (MQ=255)
                                                                              gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttca                                                          <  1:2779611‑M1/128‑78 (MQ=255)
                                                                              gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                                            <  2:1870580‑M1/126‑76 (MQ=255)
                                                                              gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                                                            <  1:3293869‑M1/126‑76 (MQ=255)
                                                                                  tgttcctGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                                          >  2:1663942‑M1/4‑53 (MQ=255)
                                                                                  tgttcctGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                                          <  1:1663942‑M1/95‑46 (MQ=255)
                                                                                  tgctcCTGGTGCTAAAACGACAATTGCCAGTTTTCCAACTTCTCCTGTAGTAAaaacggtttgtatcgtttctcattctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccatcagcaag                                                     >  2:1788205‑M1/3‑53 (MQ=255)
                                                                                      ccTGGTGCTACACCTTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  1:514082‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAATCCGTCTATTGCCAGTTTTCCTTCTTCTCCTGTAGTTAtaccggttggtagcgtttctccttctcggttctgtatctcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  2:1609445‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  1:2761228‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  2:3419214‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  2:988618‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttatagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  1:2850179‑M1/134‑86 (MQ=255)
                                                                                      ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtgtgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  <  1:319919‑M1/134‑86 (MQ=255)
                                                                                       cTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                                                 <  1:3461206‑M1/118‑71 (MQ=255)
                                                                                        tGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                                                  >  1:2576786‑M1/1‑47 (MQ=255)
                                                                                         ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt                                              >  1:1686414‑M1/1‑46 (MQ=255)
                                                                                         ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt                                              <  1:399513‑M1/135‑90 (MQ=255)
                                                                                          gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta                                             <  2:835399‑M1/135‑91 (MQ=255)
                                                                                          gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcctagaaggacttcaccactgccttcagcatgtttaatta                                             <  2:3230480‑M1/135‑91 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag                                            <  2:375955‑M1/134‑92 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag                                            >  1:1277046‑M1/1‑43 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag                                            >  1:723488‑M1/1‑43 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  >  2:2485449‑M1/1‑43 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                                                      <  2:3047483‑M1/108‑66 (MQ=255)
                                                                                            gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                                                              <  1:1008590‑M1/100‑58 (MQ=255)
                                                                                             cTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagtt                                          <  2:3273857‑M1/135‑94 (MQ=255)
                                                                                                aaccgtCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                                                >  1:2321806‑M1/3‑39 (MQ=255)
                                                                                                aaccgtCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                                                <  2:2321806‑M1/92‑56 (MQ=255)
                                                                                                  ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                                                  <  1:2517444‑M1/90‑54 (MQ=255)
                                                                                                  ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac                                      >  1:811122‑M1/1‑37 (MQ=255)
                                                                                                   cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac                                    <  2:3461996‑M1/135‑100 (MQ=255)
                                                                                                   cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac                                    >  1:1427529‑M1/1‑36 (MQ=255)
                                                                                                   cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac                                    <  1:1373650‑M1/135‑100 (MQ=255)
                                                                                                    gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAtaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc                                   <  2:3179782‑M1/135‑101 (MQ=255)
                                                                                                    gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac                                    >  1:3189007‑M1/1‑35 (MQ=255)
                                                                                                    gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggact                                                                         >  1:695375‑M1/1‑35 (MQ=255)
                                                                                                    gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggact                                                                         <  2:695375‑M1/97‑63 (MQ=255)
                                                                                                       aaTTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagctcaacaccacc                                >  2:1457011‑M1/1‑32 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  1:1986942‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  2:2992744‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  1:1541410‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  2:56695‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  2:2129068‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  2:1472876‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccaccc                               >  1:2661149‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  >  1:1174094‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                                                  >  1:999977‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagca                                                       >  2:110266‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                                                          >  2:2184385‑M1/4‑31 (MQ=255)
                                                                                                        attgccaGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                                                       <  1:1727937‑M1/60‑33 (MQ=255)
                                                                                                          tgcCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgt                             >  1:443775‑M1/2‑29 (MQ=255)
                                                                                                              aGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcacccctgccttcagcatgtttaattagttcaacaccacccgtatca                         <  2:2122839‑M1/135‑111 (MQ=255)
                                                                                                               gTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaa                        >  1:1101533‑M1/1‑24 (MQ=255)
                                                                                                                  ttCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaag                       <  1:2638164‑M1/133‑113 (MQ=255)
                                                                                                                      aTCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgtt                 <  2:1986942‑M1/135‑119 (MQ=255)
                                                                                                                       tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt                <  2:2685119‑M1/135‑120 (MQ=255)
                                                                                                                       tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt                <  1:2218609‑M1/135‑120 (MQ=255)
                                                                                                                       tcttctCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt                <  1:2126709‑M1/135‑120 (MQ=255)
                                                                                                                       tattatcctgtAGTTAaacctgtttgtagcttttatacttctctgttatgtaactaaaaaacagatccttgaaggaattcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttt                <  1:2562484‑M1/130‑120 (MQ=255)
                                                                                                                        cttctccTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgtttt               <  1:2160341‑M1/132‑121 (MQ=255)
                                                                                                                              cTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatgg         >  1:306208‑M1/1‑9 (MQ=255)
                                                                                                                                gtagttaaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttctgcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggtt       <  1:339495‑M1/132‑129 (MQ=255)
                                                                                                                                    ttAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaac    >  2:3547641‑M1/1‑3 (MQ=255)
                                                                                                                                    ttAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaac    >  2:1840949‑M1/1‑3 (MQ=255)
                                                                                                                                    ttAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggaattcaccactgacttcagcaatattaataaaaacaacaccacccgtataaaggatgttttctatcgtaaact   >  1:1800037‑M1/1‑3 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggttgttttcaatggttaacgt  <  2:1326281‑M1/134‑134 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  <  1:2234074‑M1/134‑134 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  >  1:3157002‑M1/1‑1 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  >  2:1192560‑M1/1‑1 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  <  2:2405284‑M1/134‑134 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  <  1:3547641‑M1/134‑134 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  <  2:3088048‑M1/134‑134 (MQ=255)
                                                                                                                                      aaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccacccgtatcaaggatgttttcaatggttaacgt  >  2:1754747‑M1/1‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
TCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_12/59142‑59337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.