New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_54 = 6110 (0.000)397 (0.570) 91/254 0.1 100% intergenic (+1/–) rasttk_feature_creation_tool=tRNAscan‑SE/– tRNA‑Arg‑ACG/–
?AssemblyC74_contig_63 1 = 0 (0.000)intergenic (–/‑8) –/rasttk_feature_creation_tool=tRNAscan‑SE –/tRNA‑Pro‑TGG

Only 100 of 666 total aligned reads displayed.

AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611
                                                                                                                                      |                                                                                                                                     
  aTCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTta                                                                                                                                     <  2:2349743‑M1/135‑3 (MQ=255)
   tCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaa                                                                                                                                    >  2:2554491‑M1/1‑132 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaa                                                                                                                                <  1:2350357‑M1/135‑8 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaa                                                                                                                                <  2:3078925‑M1/135‑8 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  1:3187886‑M1/1‑128 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  2:3210834‑M1/1‑128 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaac                                                                                                                              >  1:1424489‑M1/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaac                                                                                                                              >  2:2264457‑M1/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaac                                                                                                                              >  2:267079‑M1/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaac                                                                                                                              >  2:277026‑M1/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttt                                                                                                                              <  1:2654908‑M2/135‑10 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  1:1301113‑M1/1‑119 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:2728259‑M1/135‑18 (MQ=255)
                 aTCACCGTACCGGTGCGATTCCGGTCCTCGGCATTTCAAATCTGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:1817657‑M1/135‑18 (MQ=255)
                  ccaCCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  1:122189‑M1/2‑117 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAATGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  2:196915‑M2/1‑116 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  2:2819640‑M2/1‑116 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  1:3260361‑M2/1‑116 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  2:669554‑M2/1‑116 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  1:2412974‑M2/1‑116 (MQ=255)
                    aCCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagct                                                                                                                   <  2:734115‑M1/135‑21 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctca                                                                                                                 <  2:1422037‑M1/135‑23 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctca                                                                                                                 <  1:3367134‑M1/135‑23 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacg                                                                                                                 >  1:2957567‑M2/1‑113 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacg                                                                                                                 >  1:3121155‑M2/1‑113 (MQ=255)
                          ccGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctt                                                                                                             >  1:1651506‑M1/1‑109 (MQ=255)
                           cGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttg                                                                                                            <  1:1803760‑M1/135‑28 (MQ=255)
                           cGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttg                                                                                                            <  2:1464294‑M1/135‑28 (MQ=255)
                           cGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGAACTAAAGGTGAGGGGTTCGACTCCTCTTGGGCGCGTagtcgtttttattttttaaacgggaag                                                                                                            <  2:2109967‑M2/135‑28 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttgg                                                                                                           >  1:94617‑M1/1‑107 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACGACGGATCAAAAGGGTAGGGGTTCGACTCCTCTTGGGCGCGGagtcttttttattttttaaacgggaagt                                                                                                           <  2:3268265‑M2/135‑29 (MQ=255)
                             gTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  1:28251‑M2/1‑106 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaa                                                                                                                                >  1:222623‑M1/1‑103 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagc                                                                                                     <  1:160956‑M1/135‑35 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  1:847960‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacg                                                                                                                             >  1:1387268‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          <  2:3360765‑M2/129‑30 (MQ=255)
                                     ccGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcact                                                                                                  >  2:1543732‑M1/1‑98 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttg                                                                                                <  2:1020892‑M1/135‑40 (MQ=255)
                                        gTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttgg                                                                                               <  1:2533837‑M1/135‑41 (MQ=255)
                                        gTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttgg                                                                                               <  1:3503167‑M1/135‑41 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggttt                                                                                            >  1:2001728‑M1/1‑92 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTCTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggta                                                                                             >  2:408898‑M2/1‑92 (MQ=255)
                                              ggCATTTCAAATAAGCGCCCATAGCTCAACTGGATAGAGTGATTGACTACCGATCAAAAGGTTAGGGGTACGACTCCTCTTGGGCGCGTtaattaaacgggaagtagcacagcttggtagagcacttggtttggg                                                                                         <  2:3293613‑M1/135‑47 (MQ=255)
                                                cATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggac                                                                                       >  1:1960678‑M1/1‑87 (MQ=255)
                                                cATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     <  2:2926078‑M2/121‑35 (MQ=255)
                                                cATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  1:2595454‑M2/1‑87 (MQ=255)
                                                         tatGCGCCCATAGCTCAACTGGATAGAGTGATTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                              <  2:2294600‑M1/135‑58 (MQ=255)
                                                             cgcCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggacc                                                                          <  2:1076905‑M2/135‑62 (MQ=255)
                                                             cgcCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:1992123‑M2/1‑74 (MQ=255)
                                                                    aGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggt                                                                   >  1:686053‑M2/1‑67 (MQ=255)
                                                                      cTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaa                                                                   >  2:2045877‑M1/1‑65 (MQ=255)
                                                                            tGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggt                                                                   >  1:565222‑M2/1‑59 (MQ=255)
                                                                             ggATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtct                                                           >  2:1342641‑M1/1‑58 (MQ=255)
                                                                             ggATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtct                                                           >  2:162940‑M1/1‑58 (MQ=255)
                                                                             ggATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttc                                                          <  1:1911226‑M2/135‑78 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccg                                                      >  1:478208‑M1/1‑54 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccg                                                      >  1:735997‑M1/1‑54 (MQ=255)
                                                                                   agTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgat                                                    >  2:2859104‑M1/1‑52 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctca                                                                                                                 >  1:1829374‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaa                                                       <  1:2736562‑M2/129‑81 (MQ=255)
                                                                                        ttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagaagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtc                                                <  1:150427‑M2/134‑88 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  1:2869929‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:614360‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:1260071‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:845322‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                  >  1:2461549‑M2/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          <  2:1185108‑M2/73‑30 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttatttattaaacgggaagtagctcagcttggtagagcacttggattggtaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:291367‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtctttattatattttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:1720750‑M2/135‑92 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  1:1083881‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  2:867090‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  1:1564830‑M1/1‑37 (MQ=255)
                                                                                                   tCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     <  2:2436679‑M1/134‑99 (MQ=255)
                                                                                                    cataaggtTCTGGGGTCGACTCCTCTTGGGCGCGTtaattaaacggctagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   <  2:2492128‑M1/132‑101 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   >  2:513025‑M1/1‑35 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   >  1:458974‑M1/1‑35 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   <  2:2996500‑M1/135‑101 (MQ=255)
                                                                                                       aaGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgg                                <  2:94617‑M1/135‑104 (MQ=255)
                                                                                                       aaGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgg                                <  2:439636‑M1/135‑104 (MQ=255)
                                                                                                       aaGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgg                                <  2:3461487‑M1/135‑104 (MQ=255)
                                                                                                         ggTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgggg                              <  2:1780707‑M1/135‑106 (MQ=255)
                                                                                                          gTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggg                               >  2:223015‑M1/1‑29 (MQ=255)
                                                                                                             aGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggcctt                          <  1:795428‑M1/135‑110 (MQ=255)
                                                                                                             aGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggcctt                          <  1:2251292‑M1/135‑110 (MQ=255)
                                                                                                               gggTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctt                        <  1:380641‑M2/135‑112 (MQ=255)
                                                                                                               gggTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                    <  1:2116653‑M2/91‑68 (MQ=255)
                                                                                                               gggTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagct                                                                                                       <  1:3317171‑M2/56‑33 (MQ=255)
                                                                                                                      aCTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacccggggccttagctcagct                 <  1:3441927‑M1/135‑119 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                              <  2:3043166‑M1/73‑58 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                              >  1:3043166‑M1/1‑16 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgtttt                <  2:2398652‑M2/135‑120 (MQ=255)
                                                                                                                        tcctcTTGGGCGCGTtaattaaccgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgg               <  1:1020401‑M1/135‑121 (MQ=255)
                                                                                                                        tcctcTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgg               <  1:2767621‑M1/135‑121 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          >  2:1850689‑M1/1‑10 (MQ=255)
                                                                                                                                   gcgTtaattaaacgggaagtagctcagcttggtagatcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcct     <  1:631438‑M1/134‑131 (MQ=255)
                                                                                                                                   gcgTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccatgtggtcgcaggttcgaatactgtcttccctattttttttatcttgctttttgttttcaaatgattta     >  2:3541748‑M2/1‑4 (MQ=255)
                                                                                                                                     gTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcctgct  >  2:2606326‑M1/1‑2 (MQ=255)
                                                                                                                                     gTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcctgct  >  2:1749917‑M1/1‑2 (MQ=255)
                                                                                                                                     gTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttcaaatgatttataa  <  2:1925094‑M2/135‑134 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.