New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_30 = 330229 (0.990)238 (0.970) 73/254 0.2 67.5% intergenic (+78/+111) rasttk_feature_annotation_tool=annotate_proteins_si milarity/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Mobile element protein/hypothetical protein
?AssemblyC74_contig_36 = 1754 0 (0.000)intergenic (+133/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–

Only 100 of 267 total aligned reads displayed.

GAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_36/1620‑1754
                                                                                                                                      |                                                                                                                                 
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTATGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAAATTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  2:1672411/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:3489941/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:2552570/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:1163411/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:2447174/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:2419948/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  2:3186073/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  2:3186044/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  2:1426403/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  1:2236303/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                   >  2:2022818/1‑135 (MQ=255)
    aaGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggc                                                                                                                               >  1:2022818‑M2/1‑131 (MQ=255)
           tGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgt                                                                                                                        <  1:2207958‑M2/135‑12 (MQ=255)
               tGTCAATTGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                    >  2:1998853‑M2/1‑120 (MQ=255)
               tGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                    >  1:3088069‑M2/1‑120 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  1:2012665‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  2:2207958‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  2:2330153‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  2:2357102‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  2:2690536‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  1:902780‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  1:3186044‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  1:648723‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTATTTATAATCTTTAATTCGATAAGACTTTCAAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                  >  2:2265599‑M2/1‑118 (MQ=255)
                   aaTGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcg                                                                                                                 <  1:2150517‑M2/134‑19 (MQ=255)
                   aaTGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaat                                                                                                                   <  2:584724‑M2/132‑17 (MQ=255)
                      ggCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                             >  1:1884856‑M2/1‑113 (MQ=255)
                      ggCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                             >  2:629007‑M2/1‑113 (MQ=255)
                       gCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactg                                                                                                            >  2:835311‑M2/1‑112 (MQ=255)
                        ccATTCAAAAATGTATGTTTTTGGCACATAAATAAAAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCTATAAGACTTTAAAGTAATATGAATAATCTtggctctttgtcaaatcggactga                                                                                                           <  1:2732497‑M2/135‑25 (MQ=255)
                           ttCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        >  1:1043541‑M2/1‑108 (MQ=255)
                           ttCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        >  1:688964‑M2/1‑108 (MQ=255)
                           ttCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        >  2:714420‑M2/1‑108 (MQ=255)
                           ttCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        >  2:2153106‑M2/1‑108 (MQ=255)
                            tCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataag                                                                                                       >  1:539164‑M2/1‑107 (MQ=255)
                             cAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        >  1:2687577‑M2/1‑106 (MQ=255)
                             cAAAAATGTAGGTTGTAGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATACGATAATACTATCAAGTAATATGAATAATCTtggctctatgtcaaatcggactgataag                                                                                                       <  2:2983941‑M2/134‑29 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                     <  2:1193459‑M2/135‑31 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                     <  1:3266651‑M2/135‑31 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                             >  1:3284614‑M2/1‑105 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                             <  2:3284614‑M2/127‑23 (MQ=255)
                                        gTTTTTTGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                     <  2:3108410‑M2/125‑31 (MQ=255)
                                        gTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                     >  1:3108410‑M2/1‑95 (MQ=255)
                                           tttGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaaca                                                                                         >  1:1384407‑M2/1‑92 (MQ=255)
                                            ttGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatc                                                                                       >  1:472974‑M2/1‑91 (MQ=255)
                                            ttGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatc                                                                                       >  1:1471995‑M2/1‑91 (MQ=255)
                                             tGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatca                                                                                      >  2:138819‑M2/1‑90 (MQ=255)
                                                cccATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtc                                                                                                                       >  2:547268‑M2/1‑87 (MQ=255)
                                                    taaataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttag                                                                               >  1:548148‑M2/1‑83 (MQ=255)
                                                    taaataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttag                                                                               >  2:2057345‑M2/1‑83 (MQ=255)
                                                     aaataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatc                                                                                       >  1:440145‑M2/1‑82 (MQ=255)
                                                      aataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagta                                                                             <  2:513631‑M2/135‑55 (MQ=255)
                                                      aataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        <  1:2605868‑M2/108‑28 (MQ=255)
                                                       ataaCAAAGTTACTTATACGACAACTTTTGTTCTTTAAAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaa                                                                            <  2:426859‑M2/135‑56 (MQ=255)
                                                           cAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagt                                                                        >  1:745828‑M2/1‑76 (MQ=255)
                                                           cAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagt                                                                        >  1:2095997‑M2/1‑76 (MQ=255)
                                                                 tACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcact                                                                    <  2:2554910‑M2/133‑64 (MQ=255)
                                                                  aCTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactag                                                                  >  2:3266651‑M2/1‑69 (MQ=255)
                                                                     tataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagcttt                                                              <  2:2934326‑M2/135‑70 (MQ=255)
                                                                     tataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaa                                                                                     <  2:2612357‑M2/112‑47 (MQ=255)
                                                                     tataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatct                                                                                                <  1:585042‑M2/101‑36 (MQ=255)
                                                                      ataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttg                                                             <  2:1743314‑M2/135‑71 (MQ=255)
                                                                      ataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                        <  2:2682761‑M2/92‑28 (MQ=255)
                                                                        aCGACACCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaacgttagtaaaagtcacgagctttgat                                                           >  2:3336756‑M2/1‑63 (MQ=255)
                                                                           aCAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtt                                                        <  2:471826‑M2/135‑76 (MQ=255)
                                                                           aCAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtt                                                        <  1:1459013‑M2/135‑76 (MQ=255)
                                                                            cAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttt                                                       <  2:2083350‑M2/135‑77 (MQ=255)
                                                                            cAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggatctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttt                                                       <  2:1235486‑M2/135‑77 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                      >  2:1145053‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                      >  1:513631‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                      <  2:688610‑M2/135‑78 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                      >  2:2447174‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                      >  2:2824548‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                    >  1:1960302‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                    <  2:1960302‑M2/73‑16 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttttttt                                                   >  1:2068632‑M2/1‑55 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttttttt                                                   >  1:3198570‑M2/1‑55 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtt                                                        <  1:3359623‑M2/130‑76 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctgtgatgttttttg                                                   <  2:3383218‑M2/135‑81 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggatctttgtctaatcggactgataaggtcatctatatacatcaaagttattaaaagtcactagctttgatgttttttt                                                   >  1:1672411‑M2/1‑55 (MQ=255)
                                                                                    tttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgt                                               >  1:1193459‑M2/1‑51 (MQ=255)
                                                                                    tttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgt                                               >  1:1021423‑M2/1‑51 (MQ=255)
                                                                                     ttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtg                                              >  1:1527982‑M2/1‑50 (MQ=255)
                                                                                     ttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtg                                              >  1:863135‑M2/1‑50 (MQ=255)
                                                                                                 tttAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaac                                  >  2:1459013‑M2/1‑38 (MQ=255)
                                                                                                 tttAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaac                                  >  1:1743314‑M2/1‑38 (MQ=255)
                                                                                                     aTTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgt                              >  1:1235486‑M2/1‑34 (MQ=255)
                                                                                                              gACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaa                     <  1:2315867‑M2/135‑111 (MQ=255)
                                                                                                              gACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaa                     <  1:2667052‑M2/135‑111 (MQ=255)
                                                                                                                  ttCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaat                 >  1:1404008‑M2/1‑21 (MQ=255)
                                                                                                                    ccAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatcc               >  1:3414293‑M2/1‑19 (MQ=255)
                                                                                                                     cAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccg              >  1:110826‑M2/1‑18 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc             <  2:1821810‑M2/135‑119 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc             <  1:2123234‑M2/135‑119 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc             <  1:2356100‑M2/135‑119 (MQ=255)
                                                                                                                          aTTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagc         >  2:1508745‑M2/1‑13 (MQ=255)
                                                                                                                             tGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgca      >  2:1895464‑M2/1‑10 (MQ=255)
                                                                                                                             tGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgca      >  2:2521950‑M2/1‑10 (MQ=255)
                                                                                                                                 taatCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgcatatt  >  2:348927‑M2/1‑6 (MQ=255)
                                                                                                                                      ttggctctttgtcaaatcggactgataaggtcatctatgaacatcaaagttagtaaaagt                                                                        >  1:2953631‑M2/1‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                 
GAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_36/1620‑1754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.