New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_43 = 12170 (0.000)1035 (1.680) 86/248 0.1 74.0% intergenic (‑2/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–
?AssemblyC74_contig_44 617 = 729 (0.860)coding (520/1134 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 hypothetical protein

Only 100 of 1044 total aligned reads displayed.

TGGTACTTGGACATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_43/1087‑1217
                                                                                                                                  |                                                                                                                                     
      ttGAACATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattcttt                                                                                                                             <  1:2127122‑M1/135‑11 (MQ=255)
        ggACATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattcttttt                                                                                                                           <  1:311010‑M1/135‑13 (MQ=255)
         gACATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttt                                                                                                                          >  1:2216965‑M1/1‑122 (MQ=255)
           cATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTGTCTCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttg                                                                                                                        >  2:2306333‑M1/1‑120 (MQ=255)
           cATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttg                                                                                                                        >  1:1507585‑M1/1‑120 (MQ=255)
           cATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttg                                                                                                                        >  1:1412831‑M1/1‑120 (MQ=255)
            aTTGGTCTTATCGCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGatcattctttttttgc                                                                                                                       >  2:1153048‑M1/1‑119 (MQ=255)
                        gCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaact                                                                                                              >  1:1577239‑M1/1‑107 (MQ=255)
                         ccGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatct                                                                                                          <  1:1852206‑M1/135‑30 (MQ=255)
                         ccGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatct                                                                                                          >  2:2149780‑M1/1‑106 (MQ=255)
                              ataGTTCGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaa                                                                                                     >  2:1825516‑M1/1‑101 (MQ=255)
                              ataGTTCGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaa                                                                                                     >  1:2377423‑M1/1‑101 (MQ=255)
                              ataGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaa                                                                                                     >  2:556735‑M1/1‑101 (MQ=255)
                                 gTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaattt                                                                                                  <  1:2639932‑M1/135‑38 (MQ=255)
                                    cGTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgt                                                                                                <  1:1530073‑M1/134‑40 (MQ=255)
                                    cGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgt                                                                                                <  1:2687702‑M1/134‑40 (MQ=255)
                                     gTCAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  2:1065231‑M1/1‑94 (MQ=255)
                                       cAGCTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  2:194291‑M1/1‑92 (MQ=255)
                                       cAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  2:1006642‑M1/1‑92 (MQ=255)
                                       cAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  2:2639567‑M1/1‑92 (MQ=255)
                                       cAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  1:1705360‑M1/1‑92 (MQ=255)
                                       cAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  1:218828‑M1/1‑92 (MQ=255)
                                          cTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgt                                                                                         >  2:2867601‑M1/1‑89 (MQ=255)
                                          cTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtc                                                                                               >  2:2393385‑M1/1‑89 (MQ=255)
                                          cTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttg                                                                                                 <  2:1654973‑M1/127‑39 (MQ=255)
                                          cTTGTATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttg                                                                                                 >  1:1654973‑M1/1‑89 (MQ=255)
                                          cTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgt                                                                                         >  1:2060258‑M1/1‑89 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:2282954‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:478219‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:2568167‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:2045060‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:1104989‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  1:2604151‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:1788662‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  2:1614542‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  1:100223‑M1/135‑58 (MQ=255)
                                                     cTAATTGATCATCCCACTCTCCTGTCCAATCGCATTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              <  1:536456‑M1/135‑58 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:1487245‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:884134‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:831508‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:706297‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactat                                                                                                            <  1:2283525‑M1/103‑28 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  1:1977459‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:1890097‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  1:814649‑M1/1‑76 (MQ=255)
                                                       aaTTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATATTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatc                                                                             >  2:1239842‑M1/1‑76 (MQ=255)
                                                          tGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatca                                                                         <  1:1949025‑M1/135‑63 (MQ=255)
                                                           gATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatca                                                                         >  1:2575585‑M1/1‑72 (MQ=255)
                                                               atcCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatctt                                                                    >  2:1399353‑M1/1‑68 (MQ=255)
                                                               atcCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatctt                                                                    <  1:2796197‑M1/135‑68 (MQ=255)
                                                               atcCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatctt                                                                    <  2:635218‑M1/135‑68 (MQ=255)
                                                                    aCTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatct                                                                >  1:1059453‑M1/1‑63 (MQ=255)
                                                                         ccTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatc                                                                 <  1:567479‑M1/128‑71 (MQ=255)
                                                                            gTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttatt                                                       <  1:1271921‑M1/135‑81 (MQ=255)
                                                                             tCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattc                                                      >  2:1462996‑M1/1‑54 (MQ=255)
                                                                             tCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattc                                                      >  2:751438‑M1/1‑54 (MQ=255)
                                                                             tCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattc                                                      >  2:1715879‑M1/1‑54 (MQ=255)
                                                                              ccAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattcc                                                     >  1:1627771‑M1/1‑53 (MQ=255)
                                                                              ccAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattcc                                                     >  2:414276‑M1/1‑53 (MQ=255)
                                                                              ccAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattcc                                                     >  2:2692921‑M1/1‑53 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccat                                                   >  1:1795160‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcat                                                                              >  1:274101‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccat                                                   >  2:366410‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccat                                                   >  2:966433‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccat                                                   >  2:1290924‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccat                                                   >  1:1749605‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattcttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatc                                                   >  1:397999‑M1/1‑51 (MQ=255)
                                                                                aaTCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattcttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatc                                                   >  1:1370374‑M1/1‑51 (MQ=255)
                                                                                   cGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcat                                                <  1:188492‑M1/135‑88 (MQ=255)
                                                                                     ccTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactctctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgtgattccctcattc                                              >  2:937100‑M1/1‑46 (MQ=255)
                                                                                     ccTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattc                                              >  1:917840‑M1/1‑46 (MQ=255)
                                                                                     ccTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattc                                              >  1:755118‑M1/1‑46 (MQ=255)
                                                                                     ccTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattc                                              >  1:2863564‑M1/1‑46 (MQ=255)
                                                                                     ccTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattc                                              <  1:966433‑M1/135‑90 (MQ=255)
                                                                                     ccTTCAGTTGTAACAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctatttttgcggataaactatctggtaatttgtccactgttttctaagcataatcaatcttatcttgcgttattccatcattc                                              >  2:2092564‑M1/1‑46 (MQ=255)
                                                                                       ttCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattca                                             <  2:2918294‑M1/134‑91 (MQ=255)
                                                                                       ttCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattca                                             <  1:696874‑M1/134‑91 (MQ=255)
                                                                                       ttCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattca                                             <  1:1214791‑M1/134‑91 (MQ=255)
                                                                                        tCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaa                                           <  2:2731837‑M1/135‑93 (MQ=255)
                                                                                          aGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaac                                         >  2:796453‑M1/1‑41 (MQ=255)
                                                                                          aGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaac                                         >  2:2238997‑M1/1‑41 (MQ=255)
                                                                                          aGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaac                                         >  2:2180623‑M1/1‑41 (MQ=255)
                                                                                          aGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttatt                                                       <  2:2503820‑M1/121‑81 (MQ=255)
                                                                                              gTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacg                                        <  1:2024747‑M1/132‑96 (MQ=255)
                                                                                              gTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacg                                        <  2:278887‑M1/132‑96 (MQ=255)
                                                                                              gTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacg                                        <  1:1097933‑M1/132‑96 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  1:2452402‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  1:1911081‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  2:579395‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 >  1:1460103‑M1/1‑33 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  1:476182‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  1:1338004‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 >  1:867241‑M1/1‑33 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  2:1545851‑M1/135‑103 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 >  1:2505440‑M1/1‑33 (MQ=255)
                                                                                                  cAAATAATTTTTGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcg                                 <  1:643727‑M1/135‑103 (MQ=255)
                                                                                                         tttttGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcgcatcatc                          >  2:1982499‑M1/1‑26 (MQ=255)
                                                                                                           tttGCGCTTGTGCAATTAAATCCGataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcgcatcatctt                        <  1:23157‑M1/135‑112 (MQ=255)
                                                                                                             tGCGCTTGTGCAATTAAATCCAataattctttttttgcggttaaactatctggtaatttgtccactgttttcttagcatcatcaatcttatcttgcgttattccatcattcaaaacggtatgcgcatcatcttta                      <  1:430712‑M1/135‑114 (MQ=255)
                                                                                                                                  aataattcttttttctcggatagactatctggtaatttgtccacttcttttttagcatcattgatcttatcttgcgttattccatcattcaaaacagtatgtgtatcatctttaaataatgtattgactgtatt  >  1:1143376‑M1/1‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
TGGTACTTGGACATTGGTCTTATCGCCGGTATAGTTCGTCAGCTTATATCTTCCTAATTGATCATCCCACTCTCCTGTCCAATCGCCTTCAGTTGTATCAAATAATTTTTGCGCTTGTGCAATTAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_43/1087‑1217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.