New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_30 = 330546 (1.100)508 (0.980) 109/248 0.1 65.0% intergenic (+78/+111) rasttk_feature_annotation_tool=annotate_proteins_si milarity/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Mobile element protein/hypothetical protein
?AssemblyC74_contig_36 = 1754 0 (0.000)intergenic (+133/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–

Only 100 of 574 total aligned reads displayed.

GAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_36/1620‑1754
                                                                                                                                      |                                                                                                                                     
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGTCCCATAAATAACAAGGTTAATTATACGACAACTTTTTTTCTGTATAATCTTTAATTCGATAAGACTTTCAAGTAATTTGAATAATCt                                                                                                                                       >  2:1523009/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:2440787/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:2179833/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:3432866/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:2060450/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:1990572/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  1:1730207/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  2:2367244/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  2:2157132/1‑135 (MQ=255)
gAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCt                                                                                                                                       >  2:20357/1‑135 (MQ=255)
gAAAAAGTAAGTGAATGTCAATGGCCATTCAAAAATTAAGGTTTATGGACCATAAATAACAAGGTTAATTATAAGAAAACATTTATTCTTTATAATCTTTAATTCGATAATACTTTCCATAAATTAGAATAATCt                                                                                                                                       >  2:34656/1‑135 (MQ=17)
   aaaGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAATACTATCCAGTAAATTGAATAATCTt                                                                                                                                      <  1:972512‑M2/133‑2 (MQ=255)
   aaaGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtgg                                                                                                                                    >  2:1988972‑M2/1‑132 (MQ=255)
   aaaGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCAATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTt                                                                                                                                      <  1:2601873‑M2/133‑2 (MQ=255)
    aaGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtgg                                                                                                                                    <  1:3646546‑M2/134‑4 (MQ=255)
             aaTGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtca                                                                                                                          <  1:2248393‑M2/135‑14 (MQ=255)
             aaTGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtc                                                                                                                           >  2:3908888‑M2/1‑122 (MQ=255)
               tGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                        >  2:1905440‑M2/1‑120 (MQ=255)
               tGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                        >  1:3151969‑M2/1‑120 (MQ=255)
               tGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaa                                                                                                                        >  2:1079209‑M2/1‑120 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:1685755‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:3326933‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:509752‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:537583‑M2/1‑118 (MQ=255)
                 tCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:2702252‑M2/1‑118 (MQ=255)
                 acaATTGCCATTCAAAAATGTAGGTTTTTGGCACATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTGAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcacatc                                                                                                                      >  2:1432526‑M2/2‑118 (MQ=255)
                  cAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaat                                                                                                                       <  2:1683899‑M2/133‑17 (MQ=255)
                      ggCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                                 >  1:230158‑M2/1‑113 (MQ=255)
                      ggCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggact                                                                                                                 >  1:904024‑M2/1‑113 (MQ=255)
                        ccATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  1:1590654‑M2/1‑111 (MQ=255)
                        ccATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatc                                                                                                                      >  2:559956‑M2/1‑111 (MQ=255)
                          aTTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgat                                                                                                              >  2:637112‑M2/1‑109 (MQ=255)
                          aTTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgat                                                                                                              >  2:2598175‑M2/1‑109 (MQ=255)
                          aTTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgat                                                                                                              >  2:3646546‑M2/1‑109 (MQ=255)
                          aTTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgat                                                                                                              >  2:3523834‑M2/1‑109 (MQ=255)
                           ttCAAAAATGTAGTTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggcactttgtcaaatcggactgataa                                                                                                            >  2:2855920‑M2/1‑108 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                         <  1:323639‑M2/135‑31 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                         <  2:1846085‑M2/135‑31 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAAATCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                         >  2:460352‑M2/1‑105 (MQ=255)
                              aaaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGAAAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggt                                                                                                         <  2:3395525‑M2/135‑31 (MQ=255)
                               aaaaTGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtc                                                                                                        <  1:1410849‑M2/135‑32 (MQ=255)
                                   tGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatct                                                                                                    >  1:2655758‑M2/1‑100 (MQ=255)
                                   tGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatct                                                                                                    >  2:1164271‑M2/1‑100 (MQ=255)
                                        gTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaa                                                                                               <  1:48411‑M2/135‑41 (MQ=255)
                                           tttGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacat                                                                                            <  1:3728611‑M2/135‑44 (MQ=255)
                                              ggCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatc                                                                                                     <  2:3241475‑M2/123‑35 (MQ=255)
                                               gCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaa                                                                                        <  2:224755‑M2/135‑48 (MQ=255)
                                                   ataaataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagtta                                                                                    >  2:2634688‑M2/1‑84 (MQ=255)
                                                    taaataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttag                                                                                   >  2:95624‑M2/1‑83 (MQ=255)
                                                      aataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagta                                                                                 >  2:2181240‑M2/1‑81 (MQ=255)
                                                       ataaCAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaa                                                                                <  1:2929825‑M2/135‑56 (MQ=255)
                                                           cAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagt                                                                            >  2:128549‑M2/1‑76 (MQ=255)
                                                                    ttATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctt                                                                   <  1:185381‑M2/135‑69 (MQ=255)
                                                                      ataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAATACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttg                                                                 <  1:1211638‑M2/135‑71 (MQ=255)
                                                                      ataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataa                                                                                                            <  1:3824769‑M2/92‑28 (MQ=255)
                                                                      ataCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactg                                                                                                                >  2:2699075‑M2/1‑65 (MQ=255)
                                                                        aCGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgat                                                               >  1:1247340‑M2/1‑63 (MQ=255)
                                                                         cGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatg                                                              <  2:3007805‑M2/135‑74 (MQ=255)
                                                                           aCAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtt                                                            <  2:278971‑M2/135‑76 (MQ=255)
                                                                           aCAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtt                                                            <  2:2302524‑M2/135‑76 (MQ=255)
                                                                           aCAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaat                                                                                                                       <  2:1581371‑M2/76‑17 (MQ=255)
                                                                            cAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttt                                                           <  1:828232‑M2/135‑77 (MQ=255)
                                                                            cAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttt                                                           <  1:1161843‑M2/135‑77 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                          >  1:2520500‑M2/1‑58 (MQ=255)
                                                                             aaCTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                          >  2:813739‑M2/1‑58 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttttttt                                                       <  1:1107669‑M2/135‑81 (MQ=255)
                                                                                tttttttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgttttttt                                                       >  2:1389226‑M2/1‑55 (MQ=255)
                                                                                 ttttatCTTTATAATCTTTAATTCGATAATACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataatgtcatctataaaaatcaaagttagtaaaagtcaatagatttgatgttttttta                                                      <  1:28222‑M2/135‑82 (MQ=255)
                                                                                    tttCTTTATATTCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgt                                                   >  1:3808202‑M2/1‑51 (MQ=255)
                                                                                    tttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgt                                                   >  1:1542580‑M2/1‑51 (MQ=255)
                                                                                    tttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgt                                                   >  1:2112919‑M2/1‑51 (MQ=255)
                                                                                     ttCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtg                                                  >  2:3181876‑M2/1‑50 (MQ=255)
                                                                                          tataATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagct                                             >  1:3577520‑M2/1‑45 (MQ=255)
                                                                                           ataATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctg                                            >  2:3748766‑M2/1‑44 (MQ=255)
                                                                                             aaTCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtg                                                  <  1:1490919‑M2/127‑86 (MQ=255)
                                                                                                 tttAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaac                                      >  1:261871‑M2/1‑38 (MQ=255)
                                                                                                 tttAATTCGATAAGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaac                                      >  1:2222067‑M2/1‑38 (MQ=255)
                                                                                                            aaGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgatta                            >  1:2017041‑M2/1‑27 (MQ=255)
                                                                                                             aGACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttt                                                          >  1:1352577‑M2/1‑26 (MQ=255)
                                                                                                              gACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaa                         <  2:1593032‑M2/135‑111 (MQ=255)
                                                                                                              gACTTTCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaa                         <  2:1127012‑M2/135‑111 (MQ=255)
                                                                                                                  ttCCAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaat                     >  2:2073557‑M2/1‑21 (MQ=255)
                                                                                                                     cAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccg                  >  2:3814484‑M2/1‑18 (MQ=255)
                                                                                                                     cAGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccg                  >  2:431404‑M2/1‑18 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc                 <  2:1733702‑M2/135‑119 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc                 <  1:630650‑M2/135‑119 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgc                 <  2:1009384‑M2/135‑119 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagt                                                                            >  2:735028‑M2/1‑17 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagt                                                                            <  1:735028‑M2/76‑60 (MQ=255)
                                                                                                                      aGTAATTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttag                                                                                   >  1:107943‑M2/1‑17 (MQ=255)
                                                                                                                          aTTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaag              >  1:236661‑M2/1‑13 (MQ=255)
                                                                                                                          aTTTGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgca                >  1:3007805‑M2/1‑13 (MQ=255)
                                                                                                                           tttGAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccatt                                 <  1:1025154‑M2/114‑103 (MQ=255)
                                                                                                                             tGAATAATCTtggctctttgtcaaatcggactgataaggtcatatataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgaa          >  2:3359684‑M2/1‑10 (MQ=255)
                                                                                                                              gAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgcat         <  2:2962246‑M2/135‑127 (MQ=255)
                                                                                                                              gAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgcat         <  1:3496179‑M2/135‑127 (MQ=255)
                                                                                                                              gAATAATCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctg                                            >  1:441747‑M2/1‑9 (MQ=255)
                                                                                                                                ataatCTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgcatat       <  2:1210166‑M2/135‑129 (MQ=255)
                                                                                                                                     cTtggctctttgtcaaatcggactgataaggtcatctataaacatcaaagttagtaaaagtcactagctttgatgtttttttatgtgtagctgattaacccgttgattagaaaaatccgcaagcgcatattggtg  >  2:2440787‑M2/1‑2 (MQ=255)
                                                                                                                                      ttggctctttgtcaaatcggactgataaggtcatctatgaacatc                                                                                           >  2:516498‑M2/1‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
GAAAAAGTTAGTGAATGTCAATGGCCATTCAAAAATGTAGGTTTTTGGCCCATAAATAACAAGGTTACTTATACGACAACTTTTTTTCTTTATAATCTTTAATTCGATAAGACTTTCCAGTAATTTGAATAATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_36/1620‑1754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.