New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_17 1 =0 (0.000)84 (0.750)
+GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGA		 29/154 1.0 75.9% intergenic (–/+7) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/Aspartokinase (EC 2.7.2.4)
?TrimmedAssembly_T66_contig_9 = 79 90 (0.420)intergenic (–/+180) –/rasttk_feature_annotation_tool=elepa@bvbrc –/hypothetical protein

Only 100 of 132 total aligned reads displayed.

AGCCAACGACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_17/134‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATTATC‑‑‑‑‑  <  TrimmedAssembly_T66_contig_9/79‑1
                                                                                                                                      ||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                    
AGCCAACGACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGA                                                                                                                                        <  2:2229938/136‑1
   CAACGACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGG                                                                                                                                      <  1:2092291/135‑1
   CAACGACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGG                                                                                                                                      <  1:965545/135‑1
       GACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTG                                                                                                                                 >  1:888062/1‑136
       GACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTG                                                                                                                                 <  2:2271167/136‑1
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  1:1001075/1‑136
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  2:556483/1‑136
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  2:2375731/1‑136
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  1:2231640/1‑136
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  1:1344480/1‑136
         CAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGAC                                                                                                                               >  1:2231631/1‑136
               TAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAG                                                                                                                          >  1:101771/1‑135
               TAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAG                                                                                                                          >  2:1529395/1‑135
                AAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTC                                                                                                                        <  2:259337/136‑1
                AAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTC                                                                                                                        <  1:2272873/136‑1
                AAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTC                                                                                                                        <  1:368282/136‑1
                AAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTC                                                                                                                        <  1:1604080/136‑1
                AAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTC                                                                                                                        <  1:1941956/136‑1
                     AATGATGGTCTATCATTGCTCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGAGTTATATAAAGAATTTTTCGATTAACCCATTCGAGGCTGTGACATAAGTCTCTtg                                                                                                                   <  2:1559803/136‑3
                     AATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAG                                                                                                                   <  2:2175488/136‑1
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAAC                                                                                                               >  2:1507947/1‑136
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAAC                                                                                                               >  2:1695775/1‑136
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAAC                                                                                                               >  1:1147057/1‑136
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTG                                                                                                                                 <  1:997480/118‑1
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGG                                                                                                                                      >  1:844435/1‑113
                         ATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGG                                                                                                                                      <  2:844435/113‑1
                               AATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCA                                                                                                         <  1:574956/136‑1
                                    AGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGG                                                                                                       >  2:2161523/1‑133
                                            CCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAA                                                                                             >  1:1316744/1‑135
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCT                                                                                          >  2:1747419/1‑136
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCT                                                                                          >  2:1489332/1‑136
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCT                                                                                          >  2:1129709/1‑136
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCT                                                                                          >  1:142493/1‑136
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCT                                                                                          >  2:2354454/1‑136
                                              GAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTAAATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAATTCTCTAGAAACAAAGCAGGTCAGGAAAAATat                                                                                          >  2:1582287/1‑134
                                                 ATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCG                                                                                       <  2:1597744/136‑1
                                                       ATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTT                                                                                 >  1:1542549/1‑136
                                                           TGTGCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCCTACGAGGCTGTGACATAAGTCTCTAGAAACACAGCAGGTCTGGAAAAATCTTCGAATTTTTCCA                                                                             <  2:994966/136‑1
                                                              TCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGA                                                                           >  2:1829670/1‑135
                                                                GGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGA                                                                           >  1:2070385/1‑133
                                                                   GTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGC                                                                      <  1:1959794/135‑1
                                                                   GTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGC                                                                      <  2:312638/135‑1
                                                                   GTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGC                                                                      <  1:1171927/135‑1
                                                                   GTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGC                                                                      <  1:1507947/135‑1
                                                                   GTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAAATTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGC                                                                      <  1:1046311/135‑1
                                                                     ACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTT                                                                   >  2:334591/1‑136
                                                                     ACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTT                                                                   <  2:888062/136‑1
                                                                     ACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACA                                                                                                              >  1:621969/1‑93
                                                                     ACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACA                                                                                                              <  2:621969/93‑1
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATGTAATA                                                         >  1:1860350/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  2:1369982/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  1:1860344/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  1:958450/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  2:2296945/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  2:381289/1‑136
                                                                               GATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         >  1:1135703/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTCGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  2:1950263/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  2:1987758/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  1:458803/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  2:1254049/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  1:669786/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  1:761071/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGA                                                       >  2:1299430/1‑136
                                                                                 TGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATA                                                         <  2:842973/134‑1
                                                                                    CGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAA                                                    >  1:628776/1‑136
                                                                                    CGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAA                                                    >  1:882535/1‑136
                                                                                      ATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATA                                                  >  2:1061828/1‑136
                                                                                      ATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATA                                                  >  1:786800/1‑136
                                                                                      ATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATA                                                  >  1:161515/1‑136
                                                                                      ATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCG                                                                                       >  1:440559/1‑99
                                                                                                TATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAgag                                         <  2:786800/135‑4
                                                                                                TATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAgag                                         <  1:1489332/135‑4
                                                                                                TATTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAgag                                         <  2:1950503/135‑4
                                                                                                  TTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAgagcat                                      <  2:1828951/136‑7
                                                                                                  TTGCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAgagcat                                      <  1:1695775/136‑7
                                                                                                    GCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCG                                   <  2:511537/136‑1
                                                                                                    GCGTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCG                                   <  2:440621/136‑1
                                                                                                      tTTATATAAAGAATTTTTCGATTAACCCATACGAGGCGGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGG                                  <  2:344359/134‑1
                                                                                                      GTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGT                                 <  1:1254049/136‑1
                                                                                                      GTTATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGT                                 <  1:1829670/136‑1
                                                                                                        TATATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTC                                <  1:1747419/135‑1
                                                                                                          TATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAATGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGC                              >  2:1147916/1‑135
                                                                                                          TATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAATCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCAGCTTTTGATATAATAGAAAAT‑AAAAAAATAGCATCGGTCGC                              >  1:214707/1‑135
                                                                                                          TATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCTAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGAATCGGTCGC                              >  1:214713/1‑135
                                                                                                          TATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGC                              >  1:214716/1‑135
                                                                                                          TATAAAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGC                              >  2:254981/1‑135
                                                                                                              AAGAATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCG                         <  2:1774720/136‑1
                                                                                                                  ATTTTTCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAATAT‑AAAAAAAGAGCATCGGTCGCACCCGAT                       >  1:1522224/1‑134
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAA                                              <  2:878078/107‑1
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAA                                              >  1:878078/1‑107
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTAC                >  1:1036675/1‑136
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTAC                >  1:1389749/1‑136
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTAC                >  1:25130/1‑136
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACT                    <  2:1743002/132‑1
                                                                                                                       TCGATTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACT                    >  1:1743002/1‑132
                                                                                                                           TTAACCCTTACGTGGCTGTGACATATGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCAAGACCTGCTTTTTATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAA            <  1:1582287/136‑1
                                                                                                                           TTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAACGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCATTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAA            <  2:702326/136‑1
                                                                                                                           TTAACCCATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAA            <  2:702462/136‑1
                                                                                                                                  ATACGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTATTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCct     <  2:1008838/136‑3
                                                                                                                                     CGAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGAATTTTTCCAGACCTGCTTTTGATATAATAGAAAAT‑AAAAAAAGAGCATCGGTCGCACCCGATACTCTACGAAATTATCctcga  <  1:556483/136‑6
                                                                                                                                      ||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                    
AGCCAACGACAATATTAAATTAATCATGGTCAATCAAGGCGCATCCGAAATTTCTATTATGTTCGGTGTACACGACAATGATGCCGATCAAGCCGTTATTGCGTTATATAAAGAATTTTTCGATTAACCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  TrimmedAssembly_T66_contig_17/134‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTTTCCAGACCTGCTTTTGATATAATAGAAAATAAAAAAAAAAGCATCGGTCGCACCCGATACTCTACGAAATTATC‑‑‑‑‑  <  TrimmedAssembly_T66_contig_9/79‑1

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.