| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_17 | 1 = | 0 (0.000) | 84 (0.750) +GAGGCTGTGACATAAGTCTCTAGAAACAAAGCAGGTCTGGAAAAATCTTCGA |
29/154 | 1.0 | 75.9% | intergenic (–/+7) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aspartokinase (EC 2.7.2.4) |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 90 (0.420) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
Only 100 of 456 total aligned reads displayed.
‑‑‑‑‑GATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCTTCTGACTC > TrimmedAssembly_T66_contig_9/1‑214 | tcgaggataatTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcg < 1:556483‑M2/131‑54 (MQ=255) cgaggATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCctct < 2:798559/132‑1 (MQ=255) aggatAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctctttt < 1:1920559‑M2/134‑57 (MQ=255) aggatAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgt < 1:2435715‑M2/134‑4 (MQ=255) tAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttt > 1:1968308‑M2/1‑129 (MQ=255) tAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttt > 2:692681‑M2/1‑129 (MQ=255) aaTTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggtt < 1:1502533‑M2/136‑62 (MQ=255) ttCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTaa < 1:530034/136‑1 (MQ=255) cGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtc > 1:468129‑M2/1‑123 (MQ=255) agTATCGGGTGCGACCGATGC‑TCTTTTTTTATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCa > 2:2389370/1‑80 (MQ=39) gTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctatta > 1:1351206‑M2/1‑117 (MQ=255) aTCGGGTGCGCCCGATGCTCTTTTTTTC‑TTTTCTATTATATCAAAAGCAGGTCTGGAACAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgacagtgttagta > 2:968602‑M2/1‑62 (MQ=255) cGGTTGCGACCGATGCTCTTTTTTTT‑TTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgacgatttttccagacctgctttgtttctcgagacttatgtcacagcctcgcctttttgaaagtgttagttctt > 1:1653853‑M2/1‑60 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatg < 1:212724‑M2/136‑24 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatg < 1:2044103‑M2/136‑24 (MQ=255) ggTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGATTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCaa > 1:824055/1‑136 (MQ=255) ggTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatg < 1:255103‑M2/134‑77 (MQ=255) gTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCaa < 1:758008/135‑1 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgcattgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttata > 2:1147916‑M2/1‑55 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggac < 2:373507‑M2/134‑27 (MQ=255) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 2:286449/136‑1 (MQ=255) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 1:40900/136‑1 (MQ=255) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 2:578825/136‑1 (MQ=255) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGAATTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 1:894411/136‑1 (MQ=255) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCAGGAAAAATCCGAAGATTTTTCCAGACCTTCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTAGTATTTAACAAATGCATTGCAATAGCt > 1:1722953/1‑136 (MQ=37) aCCGATGCTTTTTTTTTTATTTTATATTATATCAAAAGCTGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTa > 2:111473/1‑136 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgttt < 2:876452‑M2/136‑85 (MQ=255) ccGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCAGAGCAATTGCTAg > 1:1596663/1‑136 (MQ=255) ccGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaa < 2:1877840‑M2/136‑86 (MQ=255) ccGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaa < 1:2271204‑M2/136‑86 (MQ=255) ccGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgt < 2:1245069‑M2/127‑77 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgtagatttttccagacctgctttgttgctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaa < 1:1475926‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 2:101771‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 1:71084‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 2:161515‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 2:511537‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgcgttgtttctagagtcttatgtcactgcctcttttttataaaatatagttaaatgtcttgctata < 2:2024501‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacatgctttttttctagagacttatgtcacagcctcgccgtgttgaacgtgttagttcgttgtcgtttgc < 2:397341‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccg < 2:1778884‑M2/136‑34 (MQ=255) atgctctttttttattttcTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaa < 2:1828951‑M2/130‑89 (MQ=255) tgctctttttttattttCTATTATATCAAAATCAGGTCTTTAAAAATtcgaagatttttccagaactgctttgtttctagagacttatgtcaaagcctcttttttataaaaaatatttaaatgtcttgcaaaaaa > 2:1852213‑M2/6‑47 (MQ=255) cTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGa > 1:236514/1‑134 (MQ=255) ctctttttttattTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatag < 1:1615506‑M2/133‑92 (MQ=255) tctttttttatTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaataga > 1:1085239‑M2/3‑44 (MQ=255) tctttttttatTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctg < 1:1025522‑M2/134‑93 (MQ=255) tctttttttatTTTCTATTATATCAAAAACAGGTCTGGTAAAATCCGAAGATTTTTGCAGACGTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttggatgtctattaaaatggacccttccggatttg < 2:2183696‑M2/134‑40 (MQ=255) tttttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaag > 1:1695467‑M2/1‑42 (MQ=255) tttttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaag > 1:232737‑M2/1‑42 (MQ=255) ttttttCTTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgatt > 2:1279904‑M2/1‑41 (MQ=255) ttttttATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaac > 1:1808737‑M2/1‑94 (MQ=255) tttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggc < 1:10023‑M2/136‑97 (MQ=255) tttttATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaacc < 1:600839‑M2/136‑44 (MQ=255) tttttATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaacc > 1:1789892‑M2/1‑93 (MQ=255) tttttATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaacc > 1:1941868‑M2/1‑93 (MQ=255) ttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattag > 1:867402‑M2/1‑39 (MQ=255) ttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCatc < 2:2175074/136‑1 (MQ=255) ttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCatc < 2:719944/136‑1 (MQ=255) ttttATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccg < 1:1194076‑M2/136‑45 (MQ=255) tttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggcgt < 1:1456277‑M2/136‑99 (MQ=255) tttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCatca < 2:1424927/136‑1 (MQ=255) ttATTTTCTATTATATCAATAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcatttttgaaagtgttagttcgttgacgtttgagtgctgattagtc < 2:1683775‑M2/136‑100 (MQ=255) ttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtc > 1:363350‑M2/1‑37 (MQ=255) tATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgat > 2:1061828‑M2/1‑36 (MQ=255) tATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCatcaat < 1:116466/136‑1 (MQ=255) ttttCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcg > 1:628776‑M2/1‑34 (MQ=255) tCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggca > 2:1987758‑M2/1‑31 (MQ=255) tCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttcgagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggca > 2:1950263‑M2/1‑31 (MQ=255) tattatATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatc > 1:1860344‑M2/1‑29 (MQ=255) tattatATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatc > 2:2296945‑M2/1‑29 (MQ=255) aattacaTCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatc > 1:955860‑M2/2‑29 (MQ=255) tataTCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgacttt > 2:1729129‑M2/1‑26 (MQ=255) atatCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTg < 2:1199733/136‑1 (MQ=255) aaaGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatcattgtcgtgt > 2:334591‑M2/1‑19 (MQ=255) gCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatcattgtcgtgtac < 1:124353‑M2/135‑120 (MQ=255) gCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatcattgtcgtgtac < 2:312638‑M2/135‑120 (MQ=255) gCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatg < 2:209648‑M2/58‑43 (MQ=255) gCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatg > 1:209648‑M2/1‑16 (MQ=255) aGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggcgtgataatatagttaatgaaaacgtt < 1:1830191‑M2/136‑123 (MQ=255) aGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgtacttg > 1:1263407‑M2/1‑14 (MQ=255) aGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgtacttg > 2:772354‑M2/1‑14 (MQ=255) aGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgtacttg > 1:2154356‑M2/1‑14 (MQ=255) aGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgtacttg > 1:2175952‑M2/1‑14 (MQ=255) aGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGa < 1:2407364/134‑1 (MQ=255) tCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataa > 1:77301‑M2/1‑11 (MQ=255) tCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcagg > 2:1371736‑M2/1‑64 (MQ=255) caggaaAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactgtcagcgtacttggtctt < 2:1514064‑M2/134‑127 (MQ=255) cTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTcc < 2:191875/136‑1 (MQ=255) tGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggcgtgataatatagttaatgaaaacgttttcta < 2:2424105‑M2/136‑128 (MQ=255) tGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcac > 1:305216‑M2/1‑9 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcaggcgctc < 2:2346949‑M2/135‑74 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcaggcgctc < 2:938639‑M2/135‑74 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaa > 2:148018‑M2/1‑62 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCt > 2:1353867/1‑136 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTAGTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAAtt > 2:442705/1‑133 (MQ=255) aaaaaTccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgtacttggtcttgat > 1:1124351‑M2/1‑6 (MQ=255) aaaaaTCCGTAGATTTTTCAAGACTTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggacccttccggatttgaaccgacgacctcctgcatgcgaagcaggcgctctcc > 1:986971‑M2/1‑59 (MQ=255) aaaaTtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggcgtgataatatagttaatgaaaacgttttctataaa > 2:1555696‑M2/1‑5 (MQ=255) aaaaTtcgaagatttttccagacctgctatgttactatagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatcattttcgtgtaaaccgaacataaa < 2:2079696‑M2/136‑132 (MQ=255) aaaaTCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCTTCTg < 1:2011074/136‑1 (MQ=255) aaaTCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcaggcgctctccca < 1:1525667‑M2/135‑79 (MQ=255) | ‑‑‑‑‑GATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCTTCTGACTC > TrimmedAssembly_T66_contig_9/1‑214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |