| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_2 | = 54 | 43 (0.180) | 21 (0.040) +CGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAA |
9/182 | 1.1 | 58.1% | coding (53/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family | |||||
ACGTAAGCAAATGGGACGAGAAACCAAAATTCGGTTTCTCGTCCCATTTGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_2/1‑54‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTAAAGAAGCCTTCA > TrimmedAssembly_T66_contig_42/1‑98 |||||||||||||||||||||||||||||||||||||| gtaTAAGCAAATGGGACGATAAACCGAAGTTTGGTTTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCGCTACCGTGACCAATGGCATATGGTTTAACGCCAGTAGTACGATTCCGGCTTCCGTGG > 2:2152469/4‑136 GGTTTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGA < 1:1404074/136‑1 GGTTTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGA < 2:179806/136‑1 TTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTG < 2:317461/136‑1 TTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATT < 1:1867037/135‑1 TTCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATT < 1:257655/135‑1 TTCTCGTCCCATTTGCTTACGTATTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATT < 1:1205284/135‑1 TCTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGA < 2:2258819/136‑1 CTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGT > 2:589843/1‑49 CTCGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGT < 1:589843/49‑1 CGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAAT < 2:1592176/136‑1 CGTCCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAAT < 1:948486/136‑1 CCCATTTTCTTACGTATTTTATTTTTAAAGTTGGTCCATACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 1:1598866/136‑1 CCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 2:1949288/136‑1 CCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 2:2079255/136‑1 CCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 1:2408672/136‑1 CCCATTTGCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 1:2061849/136‑1 GCTTACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTTACCTTGTCGAAAACTCGCACCTAGAATCGATTGAAATGTAAATAAt > 2:1598866/1‑134 ACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTAAAGAAGCCTTC < 2:1220539/136‑1 ACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTAAAGAAGCCTTC > 2:1669742/1‑136 ACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTAAAGAAGCCTTC > 1:741625/1‑136 ACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA < 1:641147/125‑1 ACGTCTTTGATTTTTAAAGTTGGTCCCTACCGTGACCAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTA > 2:641147/1‑125 TCTTTGATTTTTAAAGTTGGTCCCTACCGTGACAAATTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCATTGGTGACCTTGTCGAAACCTCGCACCGAGATACGATTTAAATGTAAAGAAGCATTCA > 2:621604/1‑134 |||||||||||||||||||||||||||||||||||||| ACGTAAGCAAATGGGACGAGAAACCAAAATTCGGTTTCTCGTCCCATTTGCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_2/1‑54‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCATAATGTTTAACGCCAGTATTACGATTCCGGCTTCCTTGGTGACCTTGTCGAAACCTCGCACCGAGAATCGATTGAAATGTAAAGAAGCCTTCA > TrimmedAssembly_T66_contig_42/1‑98 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |