| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_25 | 1 = | 0 (0.000) | 243 (0.740) | 72/258 | 0.2 | 100% | intergenic (–/‑494) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 243 total aligned reads displayed.
AAGCCCAAAGCAATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_25/128‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGG > TrimmedAssembly_T66_contig_41/1‑133 AGCCCAAAGCAATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTT < 1:1627362/136‑1 AGCCCAAAGCAATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACATTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTT < 2:1054038/136‑1 CAAAGCAATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCA > 1:2372880/1‑136 ATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATG < 2:2180799/136‑1 ATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATG < 2:873946/136‑1 CACTTACAATGGTAGTAACTAATTACAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGC < 1:311726/136‑1 CTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTG > 2:624960/1‑136 AATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACG > 2:118926/1‑134 AATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACG > 1:2259116/1‑134 AATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCT > 1:186890/1‑115 TAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAG > 2:511296/1‑135 TAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAG > 1:1958557/1‑135 GTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCG > 1:137713/1‑136 AACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC > 2:206072/1‑136 AACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC > 2:1152854/1‑136 AACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC > 1:275816/1‑136 AACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC < 1:1405245/136‑1 AACTAATTCCAACAAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTC < 1:2056035/136‑1 ACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCG < 1:2295138/136‑1 TTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAA < 2:2370429/136‑1 CCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACTACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAA > 2:540349/1‑134 CCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAA > 1:1769471/1‑134 CCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAA > 2:1702823/1‑134 CAACCAACTATAGGGAGTGATTACTTTGTGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCT > 2:420438/1‑136 ACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAC < 2:1626999/136‑1 ACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAC < 1:429924/136‑1 ACCAACTATAGGGAGTGATTACTTTGGGTACATCTACGTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAC < 2:2242499/136‑1 AACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGAT > 2:1818835/1‑136 ctcTAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:979646/133‑1 CTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGTGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 1:1129960/136‑1 CTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 2:2127111/136‑1 CTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 2:1018762/136‑1 CTAGAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTA < 2:1872905/136‑1 TAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCT > 1:1401584/1‑136 GTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGT > 1:1530563/1‑136 GATTACTTTGTGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTAGCCAAAGCTACGATTAGCTATGAGTT < 1:1045972/135‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 1:667657/1‑136 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT < 2:2259116/135‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGC < 1:1449335/93‑1 GATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGC > 2:1449335/1‑93 TTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGG > 1:770549/1‑135 TTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGG > 2:631798/1‑135 TTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGG > 1:1366431/1‑135 TTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAAAGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGG > 1:252344/1‑135 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGA > 2:1041835/1‑135 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 2:1490476/1‑133 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 1:1490476/133‑1 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTT > 2:1326561/1‑132 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCATTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGA > 1:1287603/1‑135 TACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCT < 2:688138/76‑1 TTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGG < 2:137713/136‑1 TTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGTCGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGG < 1:97740/136‑1 TGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGT < 2:729517/136‑1 CATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACC < 1:1416121/136‑1 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT > 1:2236692/1‑136 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT > 2:880087/1‑136 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAT < 1:462490/136‑1 TACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG > 2:152139/1‑118 ACTTTTCCACTTTTTCATCGTGGCGCACTAGCACAACTGGTCAATGAGTGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCTCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATG < 2:785668/136‑1 ACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATG > 1:1310757/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 1:388785/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 2:1222790/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 1:648525/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 2:1567996/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCC > 1:1846303/1‑136 TATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 1:1195929/113‑1 TCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAG < 1:1776653/136‑1 TCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAG > 1:1677960/1‑136 TCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAG > 1:829699/1‑136 TCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTG < 2:1683342/111‑1 CACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGA < 1:2314291/136‑1 CGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAAT > 1:1609668/1‑136 CGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAAT > 1:1642958/1‑136 TTTCAACGTGGCGCACTAGCACAACTGGTCCATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:2434299/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:1846303/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:323472/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:1958557/135‑1 TTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 1:495191/135‑1 TCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGC > 2:1757955/1‑135 TCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGC > 1:1719241/1‑135 TCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGC > 1:566566/1‑135 ACGTGGCGCACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCA > 2:2295039/1‑135 CACTAGCACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATG > 2:9161/1‑111 ACAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGC < 1:101750/136‑1 CAACTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCA > 2:1549865/1‑136 CTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAA < 1:695259/135‑1 CTGGTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGG > 2:1094022/1‑87 GTCAATGATGTGCATAAATCTTACAAATTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGTACCGGGTTAAACCTTAAGATCCAGAATTAGAACAGCAAGATTCAGATCGCAAAACGC > 2:453988/1‑136 GTCAATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGC > 1:2422689/1‑136 AATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGA > 1:2184859/1‑136 AATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGA > 1:1568914/1‑136 ATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAA > 1:106287/1‑136 ATGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAA > 1:810426/1‑136 TGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAAT > 1:94925/1‑136 TGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTA < 2:1316037/103‑1 TGAGGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGAGCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAAg > 2:959055/1‑135 GGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGC > 2:1639796/1‑136 GGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGC > 2:1281254/1‑136 GGGGCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAG > 1:1345870/1‑60 GCATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGG < 2:26394/135‑1 AAGCCCAAAGCAATCACTTACAATGGTAGTAACTAATTCCAACCAACTATAGGGAGTGATTACTTTGGGTACATCTACTTTATCACGTTTTCAACGTGGCGCACTAGCACAACTGGTCAATGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_25/128‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGG > TrimmedAssembly_T66_contig_41/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |