| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_25 | 1 = | 0 (0.000) | 243 (0.740) | 72/258 | 0.2 | 100% | intergenic (–/‑494) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 469 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTCG > TrimmedAssembly_T66_contig_41/1‑136 | aaagcccaaagcaatcacttacaatggtagtagctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCt < 1:2372009‑M2/8‑1 (MQ=255) aatcacttacaatggtagtagctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATg < 2:1802218‑M2/20‑1 (MQ=255) tcacttacaatggtagtagctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaAAAAATCTTACCAAGTAATGGc < 1:2418197‑M2/22‑1 (MQ=255) cacttacaatggtagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGc < 1:250795‑M2/22‑1 (MQ=255) cacttacaatggtagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGc < 2:2023368‑M2/22‑1 (MQ=255) cttacaatggtagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTg > 2:624960‑M2/113‑136 (MQ=255) cttacaatggtagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTg > 2:1049852‑M2/113‑136 (MQ=255) tagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAg > 1:1958557‑M2/103‑135 (MQ=255) tagtaactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAg > 2:511296‑M2/103‑135 (MQ=255) gtagctaattccaaccaatatagggagtgattactttgggtacatctactttatcacggtttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCg > 2:121510‑M2/100‑135 (MQ=255) aactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc > 2:1152854‑M2/99‑136 (MQ=255) aactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc < 1:1405245‑M2/38‑1 (MQ=255) aactaattccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc > 1:674672‑M2/99‑136 (MQ=255) agctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATg > 1:64999‑M2/98‑117 (MQ=255) agctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc > 2:1654339‑M2/98‑135 (MQ=255) agctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc > 1:1555554‑M2/98‑135 (MQ=255) agctaattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaACAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTc < 2:1003759‑M2/38‑1 (MQ=255) taattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCa < 1:256724‑M2/42‑1 (MQ=255) aattccaaccaatctagggagtgattactttgggtccatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTAACCAAGTAATGGCTGACGCCTTAGGCGTCGCcac > 2:2332990‑M2/94‑135 (MQ=255) aattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCaa > 2:449149‑M2/94‑136 (MQ=255) aattccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCaa > 2:1563919‑M2/94‑136 (MQ=255) tccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgatgggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCaaa > 1:2278539‑M2/91‑134 (MQ=255) ccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCaaa > 2:1702799‑M2/91‑134 (MQ=255) ccaaccaactatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCaaa > 1:119077‑M2/91‑134 (MQ=255) ccaaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCt > 2:1290034‑M2/90‑136 (MQ=255) accaactctagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtctatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAc < 2:2242501‑M2/49‑1 (MQ=255) accaactatagcgagtgattactttgggtacatctactttatcacgttttcaacgtggcgcacgagcaccactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAc < 2:2273108‑M2/49‑1 (MQ=255) aaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAc < 1:1751958‑M2/49‑1 (MQ=255) aaccaatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAc < 1:2346914‑M2/49‑1 (MQ=255) aatctagggagtgattactttgggtacatctactttatcacgtgttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGAtt > 2:2363061‑M2/84‑136 (MQ=255) aatatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGAtt > 1:2307326‑M2/84‑136 (MQ=255) ctatatggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTa < 1:979658‑M2/54‑1 (MQ=255) atatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTa < 1:376475‑M2/54‑1 (MQ=255) atatagggagtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTa < 1:879974‑M2/54‑1 (MQ=255) gtgattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGt > 2:1398689‑M2/74‑136 (MQ=255) gattactttgtgtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTAGCCAAAGCTACGATTAGCTATGAGtt < 1:1045972‑M2/64‑1 (MQ=255) gattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGtt < 2:1463264‑M2/64‑1 (MQ=255) gattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTg < 2:2152649‑M2/65‑1 (MQ=255) gattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTg < 2:185073‑M2/65‑1 (MQ=255) gattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTg < 2:392814‑M2/65‑1 (MQ=255) gattactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGtt > 2:1040253‑M2/72‑135 (MQ=255) ttactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAg > 2:1635422‑M2/70‑84 (MQ=255) ttactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTgg > 2:656101‑M2/70‑135 (MQ=255) ttactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTgg > 1:1463182‑M2/70‑135 (MQ=255) ttactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTgg > 1:770549‑M2/70‑135 (MQ=255) ttactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTgg > 2:1883280‑M2/70‑135 (MQ=255) tactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTa > 2:555800‑M2/69‑122 (MQ=255) tactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGa > 2:1723270‑M2/69‑135 (MQ=255) tactttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTa < 2:1325837‑M2/54‑1 (MQ=255) tttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCgg < 1:281465‑M2/71‑1 (MQ=255) tttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCgg < 1:1613366‑M2/71‑1 (MQ=255) tttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCgg < 1:183005‑M2/71‑1 (MQ=255) ttgggtacatctactttatcacgttttcaacgtggcgccctagcacaacttgtcaatgaggggaAAACATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGACAAAGCTACTATTAGCTATGAGTTGGACCggg < 2:1355039‑M2/72‑1 (MQ=255) ttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCggg < 1:1011956‑M2/72‑1 (MQ=255) ttgggtacatctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCggg < 2:1547174‑M2/72‑1 (MQ=255) catctactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAAcc < 1:811715‑M2/79‑1 (MQ=255) tactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTg > 2:152139‑M2/54‑118 (MQ=255) tactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAt > 1:2236692‑M2/54‑136 (MQ=255) tactttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTAt > 1:1640288‑M2/54‑136 (MQ=255) actttatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATg > 1:1310757‑M2/53‑136 (MQ=255) tatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATcc > 1:1846303‑M2/49‑136 (MQ=255) tatcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATcc > 1:584140‑M2/49‑136 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg > 1:1251748‑M2/47‑136 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg < 1:2116612‑M2/90‑1 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg < 1:448322‑M2/90‑1 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg > 1:829699‑M2/47‑136 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg < 2:258509‑M2/90‑1 (MQ=255) tcacgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAg < 1:1872105‑M2/90‑1 (MQ=255) cgttttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAAt > 1:1773555‑M2/44‑136 (MQ=255) cgttttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAAt > 1:950617‑M2/44‑136 (MQ=255) cgtttacaacgtggcgcactcgcacaacaggtcaatgaggggcATAAATCTTACCAAGAAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGAGTAGCTAAGAGTTGGACCGGGTGAAACCTTATGATCCAgaaa > 2:2065201‑M2/44‑135 (MQ=255) tttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTa < 2:2407625‑M2/95‑1 (MQ=255) tttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTa < 1:495191‑M2/95‑1 (MQ=255) tttcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTa < 2:1958557‑M2/95‑1 (MQ=255) tttcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTa < 1:1513063‑M2/95‑1 (MQ=255) tcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGc > 2:1757955‑M2/39‑135 (MQ=255) tcaacgtggcgcactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGc > 1:1694693‑M2/39‑135 (MQ=255) tcaacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGc > 1:1371711‑M2/39‑135 (MQ=255) tcaacgtggcgcactagcacaactggtcaaggaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGGTAAACATTATGATCAAGAATTAGc > 2:2222022‑M2/39‑135 (MQ=255) caacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTc < 1:532554‑M2/99‑1 (MQ=255) caacgtggcgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTc < 1:1595217‑M2/99‑1 (MQ=255) cgcactagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGAt > 1:139725‑M2/30‑136 (MQ=255) cactagcacaactggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATg > 2:9161‑M2/28‑111 (MQ=255) actagcacaactggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGc < 1:2041720‑M2/109‑1 (MQ=255) actggtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCaaa < 2:700938‑M2/119‑1 (MQ=255) ctggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCgg > 2:1094022‑M2/17‑87 (MQ=255) ctggtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCaaaa > 1:1670318‑M2/17‑136 (MQ=255) gtcaatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGc > 2:876279‑M2/14‑136 (MQ=255) gtcaatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTCGGCGTCGCCAAACCTACGATTAGCTATGAGATGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGc > 2:295913‑M2/14‑136 (MQ=255) caatgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCgg > 1:1063109‑M2/12‑136 (MQ=255) aatgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGa > 1:2184859‑M2/11‑136 (MQ=255) atgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTAGGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGaa > 1:1429844‑M2/10‑136 (MQ=255) atgaggggaATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGTGTTg > 2:811837‑M2/10‑74 (MQ=255) tgaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGAGCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGgaag > 2:959055‑M2/9‑135 (MQ=255) gaggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAAtt > 2:766039‑M2/8‑136 (MQ=255) ggggcATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAg > 1:1345870‑M2/6‑60 (MQ=255) aATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTc > 2:354220‑M2/2‑136 (MQ=255) aTAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGgtcg > 1:1108167/1‑136 (MQ=255) aTAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGgtcg > 1:402148/1‑136 (MQ=255) aTAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGgtcg > 2:1276252/1‑136 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAAATCTTACCAAGTAATGGCTGACGCCTTAGGCGTCGCCAAAGCTACGATTAGCTATGAGTTGGACCGGGTTAAACCTTATGATCCAGAATTAGCTCAGCAAGATGCAGATCGCAAAAGGCGGAATTGCGGTCG > TrimmedAssembly_T66_contig_41/1‑136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |