| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_3 | = 176241 | 237 (1.030) | 189 (0.890) +CAGCAGAACT |
73/238 | 0.2 | 47.8% | coding (374/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 176327 = | 211 (0.920) | coding (288/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein | |||||
Only 100 of 228 total aligned reads displayed.
AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_3/176108‑176241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTAGCTAACTTGTTTGCCTTT > TrimmedAssembly_T66_contig_3/176327‑176459 |||||||||| AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGC < 2:2056780/135‑1AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGC < 1:1288165/135‑1AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGC < 2:1044124/135‑1 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCA > 2:2166677/1‑136 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCA > 2:1212718/1‑136 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCA > 1:80645/1‑136 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAG < 1:930609/134‑1 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAG < 1:639607/134‑1 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAG < 1:2000649/134‑1 ACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGATGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCA > 1:2050326/1‑136 TGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAA < 1:1320828/136‑1 TGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAA < 1:228088/136‑1 TGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGA > 2:1008553/1‑135 GATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGA > 2:2133996/1‑134 GATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGA > 1:684847/1‑134 ATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACT > 2:982983/1‑136 AGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGT < 2:1808962/135‑1 AGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGT < 1:1874379/135‑1 TTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCT > 2:2454737/1‑136 TGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTT > 2:1954765/1‑136 TGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTT < 2:1685313/136‑1 TGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTT > 2:777885/1‑136 TGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTT < 2:1374993/136‑1 TAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCT > 2:1429464/1‑136 AGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTA > 2:280135/1‑136 GGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAG < 2:2274122/134‑1 TTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTATTAGATTGGCTAGTT > 1:483766/1‑134 TTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTT > 1:1513221/1‑134 TTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTT > 2:2152223/1‑134 TGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGC < 1:406680/135‑1 AGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGA < 1:879598/135‑1 AGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGA < 1:1340228/135‑1 AGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGA < 1:1615341/135‑1 GCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATT > 1:257073/1‑136 GCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAA > 2:327077/1‑111 GCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTAGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGATAGTTGCTGATT > 2:1138904/1‑136 AGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGT > 2:2412121/1‑136 AACTTGAAGCTTGGATAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGAAGCACTCGTTGCAAAACTAGAAGTAGCTTTGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGG > 2:763286/1‑136 ACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGT < 1:1531822/136‑1 ACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGT < 1:102403/136‑1 ACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGT < 1:1819984/136‑1 ACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGG < 1:199460/135‑1 ACTTGAAGATTGGCTAGCAGCTGATTGAGTTGATCTTGCTGAAGAAGCAGCACTAGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGAAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGT < 2:483766/136‑1 AGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGC < 2:1715464/135‑1 AGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGC < 2:1312063/135‑1 AGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGC < 2:1159392/135‑1 TTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCAC < 1:729112/134‑1 TAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGC > 2:1977986/1‑136 TAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGC > 1:1155964/1‑136 TAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGC > 1:1056214/1‑136 AGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCA < 2:2295422/136‑1 AGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGC < 2:878769/135‑1 TTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTC < 1:1767334/136‑1 TTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTGGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTC < 1:1401053/136‑1 GCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGT < 1:742360/136‑1 TGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGT < 2:257073/135‑1 TGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGT > 2:53825/1‑135 TGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGT < 1:53825/135‑1 TGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGT < 2:80645/135‑1 TGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGGAGCAGCAGAAGTCGTGGT < 2:2294019/135‑1 TTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTTGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTG < 1:1971199/135‑1 TTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGT > 2:1771353/1‑136 TTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTG < 2:1513221/135‑1 GCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAG < 2:922609/136‑1 GCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAG < 1:2432048/136‑1 AGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTAC < 1:1196410/134‑1 AGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGT < 1:755232/120‑1 AGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAA < 1:1478051/61‑1 AGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAA > 2:1478051/1‑61 CTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACT > 1:220264/1‑135 GCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCT > 1:2150186/1‑136 GCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCT < 1:2335702/136‑1 GCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCT < 1:1703382/136‑1 ACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTA > 1:244291/1‑135 TGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCA < 2:204474/136‑1 TGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCA < 2:380821/136‑1 AAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCTCCAAT > 2:2408730/1‑136 AAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAAT > 1:2195335/1‑136 AAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAAT > 1:955467/1‑136 AAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAAT > 2:1471547/1‑136 AAGTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTT < 1:2286010/56‑1 GTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGA > 2:2270401/1‑136 GTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGGGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGA > 1:1247133/1‑136 GTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCA > 1:2372947/1‑81 GTAGCTTGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGGGCAGCACTTGTAGCAGCAGAAGTCGTGGTGGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATG > 2:2017261/1‑135 TGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTA > 2:422906/1‑136 TGGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTA > 2:691266/1‑136 GGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTATCTTGGCTAGTTGATGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTGGTTGTAGTAGTACCATTTACTTCAAGCTTATCACCAATGAATATTAA > 1:1936656/1‑136 GGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAA > 1:759212/1‑136 GGCTAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAA > 1:236201/1‑136 TAGCAGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTT > 2:2420409/1‑136 AGCTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAA < 2:2355869/134‑1 CTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATT > 2:2082246/1‑136 CTGAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATT > 2:66491/1‑136 GAAGAAGTAGCAGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTA > 1:1681512/1‑135 AGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAAGGAAGATTAAGTTAACATTAGCTAACTTGTTT > 2:1870307/1‑136 AGCAGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACC > 1:1568615/1‑81 AGAACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTAGCTAACTTGTTTG > 1:612062/1‑134 ACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTAGCTAACTTGTTTGCCTTT > 2:427816/1‑136 ACTAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTAGCTAACTTGTTTGCCTTT < 1:1463814/136‑1 |||||||||| AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_3/176108‑176241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAGTCGTGGTTGTTGTAGTAGTACCATTGACTTCAAGCTTATCACCAATGAAGATTAAGTTAACATTAGCTAACTTGTTTGCCTTT > TrimmedAssembly_T66_contig_3/176327‑176459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |