| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_40 | = 631 | 0 (0.000) | 185 (0.570) | 67/258 | 0.1 | 100% | coding (1/420 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 185 total aligned reads displayed.
TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_40/497‑631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGGACATT < TrimmedAssembly_T66_contig_41/437‑303 TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 1:2371341/136‑1TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 1:4932/136‑1TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 2:961587/136‑1TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 2:1596916/136‑1TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 2:2248051/136‑1TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTT < 1:163772/136‑1 GACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACT > 2:2074056/1‑136 ACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACT < 2:1793262/135‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:1350967/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:1421909/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:1437677/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 1:2004068/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:534762/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:2048304/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:2052868/136‑1 GAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCGTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 2:1980335/136‑1 CCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGC < 2:8169/134‑1 CCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCG < 1:2151720/136‑1 TAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA < 1:802054/125‑1 TAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAA > 2:802054/1‑125 TGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTT > 1:691791/1‑135 GCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCC < 1:1052102/136‑1 GCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGATTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCC < 2:2200393/136‑1 CAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCC < 1:1433162/135‑1 AAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAA > 1:63097/1‑136 AAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAA > 2:1710364/1‑136 AAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAA > 1:2047991/1‑136 AAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAA > 1:1162362/1‑136 AAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAAT < 1:1607130/136‑1 AAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAAT > 1:45229/1‑136 CGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGAC < 1:1354781/135‑1 CGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGA < 1:1629242/134‑1 GTTTAGAGCCTTAGCCGTTCTATTGGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAA < 2:358000/135‑1 TTTAGAGCCTAAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAA > 1:384128/1‑135 GCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAA < 1:978947/134‑1 GCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAA < 2:2305903/134‑1 GCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACGTCCCAATGACCAAAAGCTAA < 1:960840/134‑1 CCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCG > 1:2232517/1‑136 TAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTG < 2:1475482/136‑1 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCCAAAGCTAACCGTTGATT > 1:1356111/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:1054475/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:1525798/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:774881/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:2267519/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:2388661/1‑136 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGC < 2:1864229/95‑1 CCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGC > 1:1864227/1‑95 CCGTTCTATTAGGGGCTTAGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACATCGACTAGAAAGCACCGTATCTACTTCCCAAAGACCAAAAGCTAACCGTAGATT > 2:1814121/1‑136 CGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGAT < 1:525719/134‑1 CGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGAT < 2:63097/134‑1 ATTAGGGGCTTTGATAGCCCATAGAAGTCGTGTCTAACGTTCAACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 2:337484/1‑136 ATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 2:1137303/1‑136 ATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 2:494067/1‑136 ATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT < 2:1967233/136‑1 ATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 2:1677953/1‑136 ATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTG < 1:1812328/126‑1 AGGGGCTTTGATAGCACATTGTAGTCGGGTCTTTAGTTCTACGATTGTAACCAGACATGATCGTGACTCTCTTAGACTAGAAAGCTCCGTATCTACTTCCCACTGACCAAAAGCTAACCGTTGATTAACAGTTGTT < 1:1814121/136‑1 GGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGG < 2:1120325/135‑1 TTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGT > 2:1634880/1‑136 TTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTT < 1:2022140/136‑1 TAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTC > 2:1033077/1‑136 TAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTT < 2:333298/135‑1 ATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGC > 2:765992/1‑68 AGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGAGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAG < 2:203836/136‑1 AAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTT > 2:1302294/1‑122 GGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTT > 2:2267350/1‑136 GGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTT > 1:1069493/1‑136 TCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGT > 2:1394150/1‑136 TTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTT < 1:2444074/112‑1 TTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGG < 1:1579031/107‑1 TTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGG > 2:1578972/1‑107 CGTTCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATT > 2:1107456/1‑136 TCTACGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTC < 2:1162362/135‑1 CGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG > 2:965731/1‑136 CGAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG > 1:720651/1‑136 GAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGA > 1:1933596/1‑136 GAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGA > 2:2242105/1‑136 GAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTG < 1:1182873/81‑1 GAATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTG > 2:1182873/1‑81 ATGTAACCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATT > 1:677801/1‑136 CCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGC > 2:2163641/1‑135 CCAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGC > 2:294176/1‑135 CAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 2:1634803/136‑1 CAGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 2:417329/136‑1 AGACATGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC > 1:581585/1‑135 TGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGG > 2:857776/1‑136 TGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGG > 2:245222/1‑136 TGATCGTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCA > 1:347797/1‑131 GTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTG > 1:1273554/1‑136 GTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 2:1913383/1‑71 GTGACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT < 1:1913383/71‑1 GACTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGC > 1:808794/1‑136 CTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGG > 1:2382426/1‑136 CTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGG > 1:1799230/1‑136 CTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACT < 2:264015/124‑1 CTCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACT > 1:264015/1‑124 CTCACTTCGACTAGAAAGCACCGTATCTACTACCCAATGACCAAAAGCTAACCGTTGAAAAAAAGTTGTTGTCCGTTGTTCGATGGAAGTCCCACATGAAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGG > 2:144138/1‑136 TCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGGA < 2:2294966/136‑1 TCACTTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC > 2:2004008/1‑120 TTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGGACATT < 2:1267207/136‑1 TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_40/497‑631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGGACATT < TrimmedAssembly_T66_contig_41/437‑303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |