BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	TrimmedAssembly_T66_contig_20	16208 =	70 (0.420)	75 (0.550)	33/212	1.9	54.5%	intergenic (‑66/‑80)	rasttk_feature_annotation_tool=elepa@bvbrc/rasttk_feature_annotation_tool=elepa@bvbrc	hypothetical protein/hypothetical protein
*	?	TrimmedAssembly_T66_contig_20	16359 =	68 (0.500)	75 (0.550)	33/212	1.9	54.5%	coding (72/117 nt)	rasttk_feature_annotation_tool=elepa@bvbrc	hypothetical protein

Only 100 of 162 total aligned reads displayed.

TGCGAGTGAAACGTTGACTTAATTGAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGCCGTCTAT  >  TrimmedAssembly_T66_contig_20/16232‑16490

 gcgaattgattcctgttaaatcaatatttttgatacgattcgtcattgccgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAattatt                                                                                                                             <  1:539670‑M2/9‑1 (MQ=255)

   gaattgattcctgttaaatcaatatttttgatacgattcgtcattgccgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAg                                                                                                                          <  1:1511372‑M2/12‑1 (MQ=255)

   gAGTGAAACGTTGACTTAATTGAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAg                                                                                                                          <  1:2291100/136‑1 (MQ=255)

              tGACTTAATTGAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGtt                                                                                                                <  1:1230022/135‑1 (MQ=255)

                  aaatcaataattttgatacgattcgtcattgccgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAATACGAATAGTTATAtt                                                                                                           >  1:1259071‑M2/110‑136 (MQ=255)

                      caatatttttgatacgattcgtcattgccgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatatttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGtt                                                                                                       >  2:227013‑M2/106‑136 (MQ=255)

                        gAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCGAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTa                                                                                                      >  2:1766344/1‑135 (MQ=255)

                        gAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTa                                                                                                      >  2:73037/1‑135 (MQ=255)

                        atatttttgatacgattcgtcagtgccgctcgataaccggatccttgactacctcaattaagtcaacgtgtcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTaa                                                                                                     <  1:1876421‑M2/33‑1 (MQ=255)

                              gtcAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGa                                                                                                                         >  2:1318954/1‑110 (MQ=255)

                              gtcAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGa                                                                                                                         <  1:1318954/110‑1 (MQ=255)

                                gatacgattcgtcattgccgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACttt                                                                                             <  2:2045285‑M2/41‑1 (MQ=255)

                                     aTACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTttatt                                                                                          <  1:1952941/134‑1 (MQ=255)

                                         ggTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAat                                                                                    >  1:2137754/1‑136 (MQ=255)

                                           ttATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAatat                                                                                  >  1:415201/1‑136 (MQ=255)

                                            tATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTATAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAAtatt                                                                                 >  2:521920/1‑136 (MQ=255)

                                                 aGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGTCGAATAGTTATATTTGTTAACAAACTGTATTAACAAtattattat                                                                            >  2:2006768/1‑136 (MQ=255)

                                                 aGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAAtattattat                                                                            >  2:1858247/1‑136 (MQ=255)

                                                 aGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAAtattattat                                                                            >  2:438503/1‑136 (MQ=255)

                                                 aGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAAtattattat                                                                            >  2:2071841/1‑136 (MQ=255)

                                                  cgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATattattatt                                                                           >  1:617795‑M2/78‑136 (MQ=255)

                                                  cgctcgataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATattattatt                                                                           >  2:1356133‑M2/78‑136 (MQ=255)

                                                    ggCAATGACGTATCGTATCAAAAATATTGATTTAACAGTAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTg                                                                          <  1:94103/135‑1 (MQ=255)

                                                    ggCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCCCTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTAGTAACAATATTATTATTg                                                                          <  2:715098/135‑1 (MQ=255)

                                                      cAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTttat                                                                                           >  1:722216/1‑116 (MQ=255)

                                                      cAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCAt                                                                       >  1:151382/1‑136 (MQ=255)

                                                      cAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCAt                                                                       >  1:2379323/1‑136 (MQ=255)

                                                       gataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATa                                                                      >  1:947691‑M2/73‑136 (MQ=255)

                                                       gataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATa                                                                      >  2:1973733‑M2/73‑136 (MQ=255)

                                                       gataaccgtatccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATa                                                                      >  1:2069794‑M2/73‑136 (MQ=255)

                                                        aTGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATaa                                                                     >  2:1619779/1‑136 (MQ=255)

                                                         taaccgtctccttgacgacctcaattaagtaaacgttacactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTACCAATATTATTATTGCATAAt                                                                    <  1:1021999‑M2/66‑1 (MQ=255)

                                                                 cGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAAt                                                            <  1:1784623/136‑1 (MQ=255)

                                                                  gTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAAtt                                                           <  2:2256870/136‑1 (MQ=255)

                                                                  ccttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAAtt                                                           <  1:1911754‑M2/75‑1 (MQ=255)

                                                                    ttgacgacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAAttt                                                          >  1:19529‑M2/60‑135 (MQ=255)

                                                                       aaaaaTATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTacac                                                      <  2:107388/136‑1 (MQ=255)

                                                                        aaaaTATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACaa                                                                                     <  1:615664/104‑1 (MQ=255)

                                                                         gacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaa                                                    >  1:904158‑M2/55‑136 (MQ=255)

                                                                         gacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaa                                                    >  2:259345‑M2/55‑136 (MQ=255)

                                                                         gacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaa                                                    >  2:2332843‑M2/55‑136 (MQ=255)

                                                                         gacctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaa                                                    >  2:1761114‑M2/55‑136 (MQ=255)

                                                                          acctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaaa                                                   >  2:658491‑M2/54‑136 (MQ=255)

                                                                          acctcaattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACaaa                                                   >  1:1550769‑M2/54‑136 (MQ=255)

                                                                              caattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATa                                                 >  2:197556‑M2/50‑134 (MQ=255)

                                                                              caattaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATa                                                 >  1:2266394‑M2/50‑134 (MQ=255)

                                                                                gATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCACTTATTAAGACGAATAGTTATATTTGTTCACAAACTTTATTAACAAGATTATTATTGCATAATTACAAAATTTACCCAAATAACtt                                             <  2:295366/136‑1 (MQ=255)

                                                                                gATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACtt                                             <  1:143640/136‑1 (MQ=255)

                                                                                gATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACtt                                             <  2:26453/136‑1 (MQ=255)

                                                                                attaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACtt                                             <  1:1056210‑M2/89‑1 (MQ=255)

                                                                                attaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACtt                                             <  2:947605‑M2/89‑1 (MQ=255)

                                                                                 ttaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAAt                                                                    >  2:607364‑M2/47‑112 (MQ=255)

                                                                                 ttaagtcaacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAAt                                                                    <  1:607364‑M2/66‑1 (MQ=255)

                                                                                  tttAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTg                                           <  1:1160331/136‑1 (MQ=255)

                                                                                        atgAATAAATTCGCACTATTTTTTTAAAAATAATGCGAATCAATTATTAAGACGAATAGTTATATTTTTTAACAAACTTTCTTAACAATATTATTATAGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:614532/134‑1 (MQ=255)

                                                                                        aacttttcactctcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:1276837‑M2/97‑1 (MQ=255)

                                                                                        aacttttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:1726568‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:1072080‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:1761114‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:1356133‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:1003044‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:947963‑M2/97‑1 (MQ=255)

                                                                                        aacgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:472607‑M2/97‑1 (MQ=255)

                                                                                         acgtttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTacac                                                      <  2:537833‑M2/80‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:98658/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:475880/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:2137754/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:739734/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:2381440/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:1576354/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:2071841/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:1511/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:369843/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:553200/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  1:1206064/133‑1 (MQ=255)

                                                                                           aaTCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTAcc                                     <  2:1159529/133‑1 (MQ=255)

                                                                                            tttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTttat                                                                                           >  2:476902‑M2/36‑78 (MQ=255)

                                                                                            tttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTttat                                                                                           <  1:476902‑M2/43‑1 (MQ=255)

                                                                                            tttcactcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTc                                 >  1:831350‑M2/36‑136 (MQ=255)

                                                                                              cAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACttt                                                                                             <  1:215691/74‑1 (MQ=255)

                                                                                              cAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTcac                               >  2:1529924/1‑136 (MQ=255)

                                                                                                aTTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAg                             >  1:354029/1‑136 (MQ=255)

                                                                                                  tcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGtt                           <  2:904158‑M2/107‑1 (MQ=255)

                                                                                                  tcgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGtt                           >  1:1116413‑M2/30‑136 (MQ=255)

                                                                                                   cgcaatatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGttt                          >  2:2148106‑M2/29‑136 (MQ=255)

                                                                                                       atatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTa                         >  2:1425302‑M2/25‑133 (MQ=255)

                                                                                                        tatttttttaaaaatcatgcgaaTCAATTATTAAg                                                                                                                          >  1:2003000‑M2/24‑35 (MQ=255)

                                                                                                        tatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTacac                                                      <  2:672840‑M2/80‑1 (MQ=255)

                                                                                                        tatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTacac                                                      >  1:672840‑M2/24‑103 (MQ=255)

                                                                                                        tatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTg                     >  1:1000468‑M2/24‑136 (MQ=255)

                                                                                                        tatttttttaaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTg                     >  1:1000396‑M2/24‑136 (MQ=255)

                                                                                                                taaaaatcattcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCaaaaa             <  2:815804‑M2/121‑1 (MQ=255)

                                                                                                                taaaaatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCaaaaa             <  1:2328086‑M2/121‑1 (MQ=255)

                                                                                                                    aatcatgctaaTCAATTATTTAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTAAAAAATTTACACAAATAACTTTGACTACCGGTCTCAGTTTAGATGGTCAAAAATAGc         <  2:2167127‑M2/125‑1 (MQ=255)

                                                                                                                    aatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGc         <  1:401547‑M2/125‑1 (MQ=255)

                                                                                                                    aatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGc         <  1:1619779‑M2/125‑1 (MQ=255)

                                                                                                                    aatcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGc         <  2:1234629‑M2/125‑1 (MQ=255)

                                                                                                                     atcatgcgaaTCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGcc        <  1:1703022‑M2/126‑1 (MQ=255)

                                                                                                                     atcatgcgaaTAAATTATTAAGACTAATAGTTATATTTGTTAACAAAATTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGcc        <  2:1259071‑M2/126‑1 (MQ=255)

                                                                                                                            gaaTCACTTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACCGTTTAGCTGGTCAAAAATAGCCGTCTAt  <  2:1714839‑M2/132‑1 (MQ=255)

TGCGAGTGAAACGTTGACTTAATTGAGGTCGTCAAGGATACGGTTATCGAGCGGCAATGACGAATCGTATCAAAAATATTGATTTAACAGGAATCAATTCGCACTATTTTTTTAAAAATCATGCGAATCAATTATTAAGACGAATAGTTATATTTGTTAACAAACTTTATTAACAATATTATTATTGCATAATTACAAAATTTACACAAATAACTTTGACTACCGGTCACAGTTTAGCTGGTCAAAAATAGCCGTCTAT  >  TrimmedAssembly_T66_contig_20/16232‑16490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.