| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_11 | = 96142 | 0 (0.000) | 141 (0.930) | 41/202 | 0.9 | 76.6% | intergenic (+314/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_9 | = 72 | 86 (0.520) | intergenic (–/+187) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
Only 100 of 589 total aligned reads displayed.
‑‑‑‑‑GATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCT > TrimmedAssembly_T66_contig_9/1‑206 | tcgaggataatTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctct > 1:1250917‑M2/6‑76 (MQ=255) aggatAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctctttt < 2:1489822‑M2/134‑57 (MQ=255) aggatAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAGATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgt < 2:351482‑M2/134‑4 (MQ=255) aggATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTc > 2:2151746/3‑136 (MQ=255) aTAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTa > 2:2085708/1‑136 (MQ=255) aTAATTTCGTAGAGTATCGGGTGCGACCGATGCATTTTTTTTTATTGTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCg < 1:1515344/134‑1 (MQ=255) tAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGCTTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttt > 2:1249303‑M2/1‑129 (MQ=255) tAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttt > 2:395196‑M2/1‑129 (MQ=255) tAATTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgttttt > 2:692681‑M2/1‑129 (MQ=255) aaTTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAACAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgttt > 1:1094310‑M2/1‑68 (MQ=255) aaGTTCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgttttttta < 2:220730‑M2/136‑69 (MQ=255) tttCGTATATTATCGGGTGCGACCGATTCTATTTTTTT‑ATTTTATATTATATCAAAAACAGGTCTGgtaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttatt > 1:2100838‑M2/1‑66 (MQ=255) tttCGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgat < 2:305404‑M2/136‑11 (MQ=255) cGTCGAGTATCGGGTGCGACCGACGCTCTATTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttgtttattact > 2:1849364‑M2/1‑63 (MQ=255) cGTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattact > 2:2327704‑M2/1‑63 (MQ=255) gTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcga > 1:1389749‑M2/1‑69 (MQ=255) gTAGAGTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcga > 1:25130‑M2/1‑69 (MQ=255) agagTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACt < 2:1359461/136‑1 (MQ=255) agagTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactca < 2:2422286‑M2/135‑76 (MQ=255) agTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttag < 1:2435074‑M2/136‑72 (MQ=255) agTATCGGGTGCGACCGATGC‑TCTTTTTTTATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCa > 2:2389370/1‑80 (MQ=39) agTATCGGGTGCGACCGATGC‑TCTTTTTTTATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCa < 1:2389370/80‑1 (MQ=39) gTATCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcg > 2:420496‑M2/1‑57 (MQ=255) aTCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagtt > 1:795706‑M2/1‑62 (MQ=255) aTCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagtt > 1:1327073‑M2/1‑62 (MQ=255) aTCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagtt > 1:1460728‑M2/1‑62 (MQ=255) aTCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgtta < 1:611975‑M2/136‑82 (MQ=255) aTCGGGTGCGACCGATGCTCTTTTTATAAGGT‑CTATTATATCAAAAACAGGACTGGAAAAATCCGAAGATTTTTCCAGACCTGATTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaa > 2:909384‑M2/1‑115 (MQ=255) tCGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaat > 2:1869155‑M2/1‑114 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgt < 1:2140744‑M2/136‑77 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacgtatgtcacagcctcgccgttttgaaagtgttagttcgg < 1:966606‑M2/136‑77 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttatt < 1:317472‑M2/136‑84 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatg < 1:2044103‑M2/136‑24 (MQ=255) cGGGTGCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttga < 1:372040‑M2/122‑10 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAATCAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaatca < 1:468581‑M2/136‑89 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtctt < 2:960758‑M2/135‑81 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaaca > 2:1549856‑M2/1‑48 (MQ=255) gCGACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcc > 2:271974‑M2/1‑48 (MQ=255) gccctttGCTATTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATATTTCCAGACCTGCTTTGTTTCTAGAGACGTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 2:1163230/130‑1 (MQ=38) gACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCt < 2:578825/136‑1 (MQ=255) gACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatata < 1:1747419‑M2/135‑83 (MQ=255) gACCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtt > 1:1857438‑M2/1‑53 (MQ=255) aCCGATGCTTTTTTTTTTATTTTATATTATATCAAAAGCTGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTa > 2:111473/1‑136 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataac < 1:1829670‑M2/136‑85 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgttt < 2:1479652‑M2/136‑85 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatctttattaaacaatc < 2:1213713‑M2/136‑92 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatc < 1:84735‑M2/136‑92 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatc < 1:935874‑M2/136‑92 (MQ=255) aCCGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattact > 1:1894368‑M2/1‑45 (MQ=255) ccGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTAAAGTCACAGCCTCTtgttattgatgtatataaaaatggaccctacc < 1:271528‑M2/136‑33 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaa < 2:1792979‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 2:101771‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgc < 2:440621‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgcgttgtttctagagtcttatgtcactgcctcttttttataaaatatagttaaatgtcttgctata < 2:2024501‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttga < 1:1670721‑M2/136‑87 (MQ=255) cGATGCTCTTTTTTT‑ATTTTCTATTATATCAAAAGCAGGACTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaaaatttaaatttattgcaaaa < 1:1963369‑M2/136‑87 (MQ=255) tgctctttttttattttCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggat > 1:1222695‑M2/6‑100 (MQ=255) cTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGa > 1:2216692/1‑134 (MQ=255) ctctttttttattTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttc < 1:1576284‑M2/72‑38 (MQ=255) tctttttttatTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaattgtgtggcaaaaaatata < 2:1977491‑M2/134‑93 (MQ=255) tctttttttatTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaataga < 1:1718936‑M2/134‑93 (MQ=255) tctttttttatTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgatta > 1:2320619‑M2/3‑37 (MQ=255) tttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaagtc < 2:2176904‑M2/136‑97 (MQ=255) tttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataaaaaatatttaaatgtcttgcaaaaaatagaaggc < 1:10023‑M2/136‑97 (MQ=255) tttttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcga > 1:878078‑M2/1‑40 (MQ=255) ttttATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttg < 1:1031843‑M2/65‑34 (MQ=255) ttttATTTTCTATTATATCAAAAACAGGTCTGgaaaaatccgaagatttttccagacctgttttg > 2:1031843‑M2/1‑32 (MQ=255) tttATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCatca < 1:1924108/136‑1 (MQ=255) ttATTTTCTATTATATCAATAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcatttttgaaagtgttagttcgttgacgtttgagtgctgattagtc < 2:1683775‑M2/136‑100 (MQ=255) tATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgat > 1:161515‑M2/1‑36 (MQ=255) ttCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgca < 2:85832‑M2/119‑88 (MQ=255) ttCTATTATATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacct > 1:726320‑M2/1‑85 (MQ=255) tCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggca > 1:669786‑M2/1‑31 (MQ=255) tCTATTATATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggca > 2:1299430‑M2/1‑31 (MQ=255) tattatATCAAAAGCAGGTCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatc > 2:2296945‑M2/1‑29 (MQ=255) tattatATCAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgac > 1:42435‑M2/1‑29 (MQ=255) tattatATCAAAAACAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcct > 1:1806547‑M2/1‑82 (MQ=255) atatCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTg < 1:219502/136‑1 (MQ=255) tCAAAAACAGGTCTGtaaaaatccgaagatttttccatacgtgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttca > 1:1988832‑M2/1‑15 (MQ=255) cAAAAGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcg > 1:1479652‑M2/1‑21 (MQ=255) cAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGAcgc < 1:235786/136‑1 (MQ=255) aaaaGCAGGTCTGGAAAAATccgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgcctttttgaaagtgttagttcgttgacgtttgagtgctgattagtcggtctgactttcagcgt > 2:1430547‑M2/1‑20 (MQ=255) aacagGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 2:1883423‑M2/3‑10 (MQ=255) aacagGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 2:108692‑M2/3‑10 (MQ=255) aacagGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 1:1184427‑M2/3‑10 (MQ=255) aacagGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 1:570190‑M2/3‑10 (MQ=255) aacagGTCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 2:742121‑M2/3‑10 (MQ=255) aacagGTCTGgaaaaatccgaagatttttacagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagc > 2:2363938‑M2/3‑10 (MQ=255) acaGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcag > 2:505123‑M2/2‑69 (MQ=255) cAGGTCTGGATACATccgtagatttttccagacctgctttttttctagagacttatgtcacagcctcgcctttttgaaagtgttagttagttgacgtttgagtgctgattagtcggtctgtctttcagcgtacttg > 1:2154398‑M2/1‑15 (MQ=255) aGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGaa < 2:1623340/135‑1 (MQ=255) aGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGaa < 2:1742078/135‑1 (MQ=255) tCTGgaaaaatccgaagatttttccagacctgttttgtttctagagacttatgtcacagcctcgtttttttattactcatcgttattaaacaatcatgattaaaacgtgccgattcttaagttcaaaagcagcca > 2:1385113‑M2/1‑4 (MQ=255) tCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcttttttataa < 2:77301‑M2/73‑63 (MQ=255) tCTGGAAAAATtcgaagatttttccagacctgctttgtttctagagacttatgtcacagcctcgtatgggttaatcgaaaaattctttatataacgcaataacggcttgatcggcatcattgtcgtgtacaccga > 2:1829670‑M2/1‑11 (MQ=255) tCTGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcagg > 1:538075‑M2/1‑64 (MQ=255) cTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTcc < 2:191875/136‑1 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgtctattaaaatggaccctaccggatttgaaccgacgacctcctgcatgcgaagcaggcgctc < 1:1647408‑M2/135‑74 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGTTTTGTTTCTAGAGACTTATGTCACAGCCTCTtgtttttgatgt > 1:1130482‑M2/1‑62 (MQ=255) tGGAAAAATCCGAAGATTTTTCCAGACCTGCGTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCt > 1:760139/1‑136 (MQ=255) | ‑‑‑‑‑GATAATTTCGTAGAGTATCGGGTGCGACCGATGCTTTTTTTTTTATTTTCTATTATATCAAAAGCAGGTCTGGAAAAATCCGAAGATTTTTCCAGACCTGCTTTGTTTCTAGAGACTTATGTCACAGCCTCTTCGTATTTAACAACTGCATTGCAATTGCTAGTTGACCTTGCATCAATCAACTATGGTGACGCGATGAAATTCCT > TrimmedAssembly_T66_contig_9/1‑206 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |